Pinned Repositories
cbare-protovis-examples
A couple small examples of visualization using protovis including a small genome browser. Described in http://digitheadslabnotebook.blogspot.com/2010/03/protovis-data-visualization-in-browser.html
data-science-from-scratch
Examples and hacks inspired by the book Data Science from Scratch by Joel Grus
docker-openSMILE
A containerized build of the openSMILE audio feature extractor
Etudes
A collection of programming problems for learning new languages and practicing coding chops.
network_portal
Archive and explore gene-regulatory networks.
vcf2maf
Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
Yelp-Dataset-Challenge
A bit of exploratory data analysis on Yelp challenge data
cbare's Repositories
cbare/Etudes
A collection of programming problems for learning new languages and practicing coding chops.
cbare/cbare.github.io
J. Christopher Bare, software engineer and occasional writer
cbare/fooalicious
Learn git in thousands of tricky and confusing steps
cbare/hackalicious
A repo for playing with Git
cbare/llm-agents-mooc-2024
My work for the Berkeley LLM Agents MOOC 2024 at llmagents-learning.org/f24
cbare/Pydoku
Sudoku solver in python
cbare/synapsePythonClient
Programmatic interface to Synapse services for Python. Please visit https://synapse.sagebase.org/ for more information.
cbare/Jazzopedia
Music geekery and exploration of classic Jazz
cbare/notes-on-deep-learning
Exercises in NNs and Deep Learning
cbare/advent-of-code-2020
My solutions to Advent of Code 2020.
cbare/advent-of-code-2021
cbare/cbare
Config files for my GitHub profile.
cbare/connect-four
An api for playing the game connect-four.
cbare/diffusion-nbs-fork
Getting started with diffusion
cbare/dlaicourse
Notebooks for learning deep learning
cbare/doccano
Open source text annotation tool for machine learning practitioner.
cbare/dot-files
dot files
cbare/fastai-class
Working through the fast ai class 2022 edition
cbare/flhaskell
Functional Programming in Haskell class
cbare/HelloDotNet
A test project to learn the basics of C# programming, very reluctantly.
cbare/hugging-face-dataset-explorer
cbare/library-app
A toy project for learning React, context, and typescript.
cbare/nlp-play
Playing with NLP
cbare/papers
A place to put old papers.
cbare/philter-lite
Open source clinical text de-identification, forked from github.com/SironaMedical/philter-lite
cbare/playing-with-llms
Playing with LLMs
cbare/pubmed_miner
A demo on retrieving and clustering pubmed abstracts
cbare/pydata2021-eda
[PyData Global 2021] Know Your Data First: An Introduction to Exploratory Data Analysis
cbare/python_machine_learning_book
Code from or inspired by the book “Python Machine Learning”
cbare/smart_open
Utils for streaming large files (S3, HDFS, gzip, bz2...)