cccsnd

cccsnd's Stars

• BioMedBigDataCenter/VENAS

  Language:Mathematica157

• ucscCancer/pathway_tools

  Tools for working with UCSC super pathway

  Language:Python106

• saezlab/FootprintMethods_on_scRNAseq

  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

  Language:R268

• reactome/pwp-browser

  A tool for visualising and interacting with pathways data

  Language:Java107

• cwieder/py-ssPA

  Single sample pathway analysis tools for omics data

  Language:Jupyter Notebook115

• xmao/kobas

  KOBAS: a command line tool for identifying significant pathways from genomic data

  Language:Python306

• taltman/RCyc

  Bidirectional interface between SRI's Pathway Tools software and R

  Language:R104

• Weikai-47/Pepper_T2T

  Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideum.

  Language:Python122

• gbif/pipelines

  Pipelines for data processing (GBIF and LivingAtlases)

  Language:Java4028

• eblerjana/pangenie

  Pangenome-based genome inference

  Language:C++11510

• steuernb/NLR-Annotator

  NLR-Annotator upload

  Language:Java6024

• dekkerlab/renseq

  Renseq Pacbio pipeline

  Language:Shell1

• eldariont/svim-asm

  Structural Variant Identification Method using Genome Assemblies

  Language:Python9511

• chmccarthy/pangenome-pipelines

  Pipelines for eukaryotic pangenome analysis from McCarthy & Fitzpatrick (2019).

  Language:Python102

• noecochetel/North_American_Vitis_Pangenome

  Construct and Analyze the North American Vitis pangenome

  Language:R213

• charlottewright/Chromosome_evolution_Lepidoptera_MS

  Scripts associated with 'Chromosome Evolution in Lepidoptera' manuscript

  Language:R83

• JiaoLab2021/EVG

  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads

  Language:C++37

• nelumbolutea/amk_article

  Codes for AMK analysis

  Language:Perl51

• sonmihpc/tokamak

  The system resource restriction utilities, one component of the SonmiHPC system.

  Language:Go2

• KYPpa/Ppac_Pexs_Spec

  1

• AnimalGenomicsETH/bovine-graphs

  Integrate multiple genome assemblies into a pangenome graph

  Language:Python325

• SunPengChuan/wgdi

  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

  Language:Python12422

• SunPengChuan/wgdi-example

  Language:CAP CDS159

• chaimol/KK4D

  This is a pipline for analysis of genome Ka,Ks,4DTv,coline

  Language:CAP CDS81

• raydai0218/Hu2020Hereditas

  Scripts and figures of rice microbiome paper

  Language:HTML51

• FelixKrueger/TrAEL-seq

  A collection of software used for the TrAEL-seq manuscript

  Language:Python21

• robinmeyers/transloc_pipeline

  Translocation Sequencing Pipeline (Alt Lab)

  Language:Perl67

• liumz93/superQ

  Language:Python13

• niaid/dsb

  Normalize CITEseq Data

  Language:R6313

• liumz93/PEM-Q

  a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ

  Language:Python86