cannot run the test data after installing
Opened this issue · 1 comments
ttriche commented
(base) tim@thinkpad-P15:~/waragraph$ ./target/release/waragraph test/data/A-3105.fa.353ea42.34ee7b1.1576367.smooth.fix.gfa test/data/A-3105.layout.tsv
[2023-05-26T14:15:52Z WARN wgpu_hal::gles::egl] No config found!
[2023-05-26T14:15:52Z WARN wgpu_hal::gles::egl] EGL says it can present to the window but not natively
[2023-05-26T14:15:52Z WARN wgpu_hal::vulkan::instance] Disabling presentation on 'Intel(R) UHD Graphics (CML GT2)' (id 0x56338c6144a0) because of NV Optimus (on Linux)
parsed 6793 edges
thread 'main' panicked at 'index out of bounds: the len is 0 but the index is 0', /home/tim/.cargo/git/checkouts/raving-wgpu-26431015070e8629/7728766/src/lib.rs:87:30
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
Good point, let's get a backtrace.
# ... with RUST_BACKTRACE=1
stack backtrace:
0: rust_begin_unwind
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:584:5
1: core::panicking::panic_fmt
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:142:14
2: core::panicking::panic_bounds_check
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:84:5
3: raving_wgpu::State::prepare_window
4: waragraph::app::window::AppWindowState::init
5: waragraph::app::App::init_viewer_1d
6: waragraph::main
note: Some details are omitted, run with `RUST_BACKTRACE=full` for a verbose backtrace.
OK fine let's run the full backtrace out into a file. Surely the program won't completely skip STDERR and STDOUT!
(base) tim@thinkpad-P15:~/waragraph$ RUST_BACKTRACE=full ./target/release/waragraph test/data/A-3105.fa.353ea42.34ee7b1.1576367.smooth.fix.gfa test/data/A-3105.layout.tsv 2>&1 > backtrace_full.txt
[2023-05-26T14:18:50Z WARN wgpu_hal::gles::egl] No config found!
[2023-05-26T14:18:50Z WARN wgpu_hal::gles::egl] EGL says it can present to the window but not natively
[2023-05-26T14:18:50Z WARN wgpu_hal::vulkan::instance] Disabling presentation on 'Intel(R) UHD Graphics (CML GT2)' (id 0x562a08fc01a0) because of NV Optimus (on Linux)
thread 'main' panicked at 'index out of bounds: the len is 0 but the index is 0', /home/tim/.cargo/git/checkouts/raving-wgpu-26431015070e8629/7728766/src/lib.rs:87:30
stack backtrace:
0: 0x562a06e16a73 - std::backtrace_rs::backtrace::libunwind::trace::he0156af2558114c2
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
1: 0x562a06e16a73 - std::backtrace_rs::backtrace::trace_unsynchronized::h1e2672bcf5105eb5
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
2: 0x562a06e16a73 - std::sys_common::backtrace::_print_fmt::haa919a14d8d859ec
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:66:5
3: 0x562a06e16a73 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hf15e8f9e6884dd5f
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:45:22
4: 0x562a06e383fc - core::fmt::write::he42254d9e3c27115
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/fmt/mod.rs:1202:17
5: 0x562a06dfbfd5 - std::io::Write::write_fmt::hfb37e0ab3a125c66
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/io/mod.rs:1679:15
6: 0x562a06dff464 - std::sys_common::backtrace::_print::h8078bdb0e2e92b53
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:48:5
7: 0x562a06dff464 - std::sys_common::backtrace::print::h09fd65486fb9c4f7
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:35:9
8: 0x562a06dff464 - std::panicking::default_hook::{{closure}}::hb89b98c578903f40
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:295:22
9: 0x562a06dff0a4 - std::panicking::default_hook::h27aa44be03b01ac8
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:314:9
10: 0x562a06dffa43 - std::panicking::rust_panic_with_hook::he7013d2ea706cde0
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:698:17
11: 0x562a06e17077 - std::panicking::begin_panic_handler::{{closure}}::hd66fe345adc7bed2
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:588:13
12: 0x562a06e16bb4 - std::sys_common::backtrace::__rust_end_short_backtrace::ha2b47ffe9f27aed9
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:138:18
13: 0x562a06dff732 - rust_begin_unwind
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:584:5
14: 0x562a065ac513 - core::panicking::panic_fmt::hbfca70bd08ba6212
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:142:14
15: 0x562a065ac452 - core::panicking::panic_bounds_check::had42be473306b825
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/panicking.rs:84:5
16: 0x562a06857830 - raving_wgpu::State::prepare_window::h8a616cb55d8d7b82
17: 0x562a066d605d - waragraph::app::window::AppWindowState::init::h47ec9aaafdae7c31
18: 0x562a0666c02c - waragraph::app::App::init_viewer_1d::h5323681411d8e33e
19: 0x562a065d7eec - waragraph::main::h8cc159b85ba8d039
20: 0x562a065d27e3 - std::sys_common::backtrace::__rust_begin_short_backtrace::h1200e36f5bd50f92
21: 0x562a065e4159 - std::rt::lang_start::{{closure}}::hb709b23e8c87ff76
22: 0x562a06dfb408 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h62af992155415807
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/core/src/ops/function.rs:283:13
23: 0x562a06dfb408 - std::panicking::try::do_call::hcfafbbba7d4f6a6c
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:492:40
24: 0x562a06dfb408 - std::panicking::try::h7ee1bfcad42abe9b
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:456:19
25: 0x562a06dfb408 - std::panic::catch_unwind::h009aa132eb8dd7d2
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panic.rs:137:14
26: 0x562a06dfb408 - std::rt::lang_start_internal::{{closure}}::h93ae259af980c7d0
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/rt.rs:148:48
27: 0x562a06dfb408 - std::panicking::try::do_call::ha0627c997265a210
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:492:40
28: 0x562a06dfb408 - std::panicking::try::h64a0afc1377cc785
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panicking.rs:456:19
29: 0x562a06dfb408 - std::panic::catch_unwind::h1c61ea510b397b89
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/panic.rs:137:14
30: 0x562a06dfb408 - std::rt::lang_start_internal::ha75927e1903320fe
at /build/rustc-Oic09u/rustc-1.65.0+dfsg0ubuntu1/library/std/src/rt.rs:148:20
31: 0x562a065d8288 - main
32: 0x7f062f629d90 - __libc_start_call_main
at ./csu/../sysdeps/nptl/libc_start_call_main.h:58:16
33: 0x7f062f629e40 - __libc_start_main_impl
at ./csu/../csu/libc-start.c:392:3
34: 0x562a065ac6f5 - _start
35: 0x0 - <unknown>
Just kidding, it absolutely does skip STDERR and STDOUT 🤦♂️ .
chfi commented
Looks like it's trying and failing to use the Nvidia GPU instead of the integrated Intel chip. Dual GPU setups are always weird, but I just updated the dev branch to support the environment variables listed here: https://crates.io/crates/wgpu
On the latest dev, try setting WGPU_ADAPTER_NAME to Intel(R) UHD Graphics (CML GT2) so that the Intel adapter is preferred.
If it still doesn't work, see if you can get the examples in the wgpu repo to work: https://github.com/gfx-rs/wgpu/wiki/Running-the-examples