how to generate legal input file with “nucleotide” coding

[Christinawang666]

I am doing a simulation and I supposed to generate 600 individuals' haplotype. Each haplotype contains 3 SNPs, we know that for each SNP, I have two options: A/T or G/C. I was wondering how many letters a subject identifier should be followed by, 3, or 6? Assume the haplotype of individual 1 is (A/T)(A/T)(G/C), and if the answer is 3 and , which 3 letters should I input? AAG/ATC or ect? or I just do it randomly? and if the answer is 6, should I input ATATGC?
I am asking this because I have tried all the circumstance but none was right and I get really confused. The error information when I input 3 SNP is: should be an id plus two fields for each locus. As for the error information when I input 5 SNP as above, it says: Data error on locus XXX, skipping this subject XXX.
I was wondering if I can get any assistance, thank you so much!

[chr1swallace]

it's a long time since I used this! I think it went individual1 A T A T G C etc

…

On Tue, 2022-03-08 at 05:37 -0800, Christinawang666 wrote: I am doing a simulation and I supposed to generate 600 individuals' haplotype. Each haplotype contains 3 SNPs, we know that for each SNP, I have two options: A/T or G/C. I was wondering how many letters a subject identifier should be followed by, 3, or 6? Assume the haplotype of individual 1 is (A/T)(A/T)(G/C), and if the answer is 3 and , which 3 letters should I input? AAG/ATC or ect? or I just do it randomly? and if the answer is 6, should I input ATATGC? I am asking this because I have tried all the circumstance but none was right and I get really confused. The error information when I input 3 SNP is: should be an id plus two fields for each locus. As for the error information when I input 5 SNP as above, it says: Data error on locus XXX, skipping this subject XXX. I was wondering if I can get any assistance, thank you so much! — Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Christinawang666]

Thank you I will try that At2022-03-08 21:40:42，Chris ***@***.***: it's a long time since I used this! I think it went individual1 A T A T G C etc

On Tue, 2022-03-08 at 05:37 -0800, Christinawang666 wrote: I am doing a simulation and I supposed to generate 600 individuals' haplotype. Each haplotype contains 3 SNPs, we know that for each SNP, I have two options: A/T or G/C. I was wondering how many letters a subject identifier should be followed by, 3, or 6? Assume the haplotype of individual 1 is (A/T)(A/T)(G/C), and if the answer is 3 and , which 3 letters should I input? AAG/ATC or ect? or I just do it randomly? and if the answer is 6, should I input ATATGC? I am asking this because I have tried all the circumstance but none was right and I get really confused. The error information when I input 3 SNP is: should be an id plus two fields for each locus. As for the error information when I input 5 SNP as above, it says: Data error on locus XXX, skipping this subject XXX. I was wondering if I can get any assistance, thank you so much! — Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: ***@***.***>