function MULTIseq.preProcess refers to a non-existing argument
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romunov commented
The call to MULTIseq.preProcess()
function refers to argument chemistry
but in the latest version of the deMULTIplex
package, this argument doesn't exist. Can you elaborate on which version of the aforementioned package you're using?
readTable <- MULTIseq.preProcess(
R1 = "../fastq/Mix1-Barcode/R1_paired.fastq.gz",
R2 = "../fastq/Mix1-Barcode/R2_paired.fastq.gz",
cellIDs = mix1_keep,
chemistry = "V2"
)
This is a screenshot of the documentation from version 1.0.2.
romunov commented
Sorry, this was posted to the wrong repository.