chucknordy

chucknordy's Stars

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++7k359

• gwct/core

  My personal core functions and scripts for manipulating sequence data, phylogenetic trees, and other things.

  Language:Python42

• gwct/murine-discordance

  Data, scripts, and other resources to accompany murine discordance manuscript

  Language:R2

• theislab/zellkonverter

  Conversion between scRNA-seq objects

  Language:R15128

• pbatard/rufus

  The Reliable USB Formatting Utility

  Language:C29.4k2.6k

• google/or-tools

  Google's Operations Research tools:

  Language:C++11.3k2.1k

• kuang-da/sc-transmogrifier

  A containerized tool for converting single-cell data between Seurat objects (R) and AnnData (Python) formats.

  Language:R3

• TheEconomist/us-potus-model

  Code for a dynamic multilevel Bayesian model to predict US presidential elections. Written in R and Stan.

  Language:HTML1.2k191

• TheEconomist/big-mac-data

  Data and methodology for the Big Mac index

  Language:Jupyter Notebook1.6k414

• RevanthRameshkumar/CRD3

  The repo containing the Critical Role Dungeons and Dragons Dataset.

  Language:HTML12916

• allisonhorst/palmerpenguins

  A great intro dataset for data exploration & visualization (alternative to iris).

  Language:R901212

• whipson/PoKi-Poems-by-Kids

  PoKi: A Large Dataset of Poems by Children

  Language:R345

• data-is-plural/newsletter-archive

  Markdown archive & RSS/Atom feeds for Data Is Plural

  Language:Python1065

• scverse/anndata

  Annotated data.

  Language:Python579154

• andrewhill157/barcodeutils

  A python module to help with extracting and correcting sequences from FASTQ files and general barcode-related utility functions.

  Language:Python11

• aertslab/single_cell_toolkit

  Tools for correcting single cell barcodes for various scATAC-seq techniques.

  Language:Shell263

• igvteam/igv-reports

  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

  Language:Python35252

• box/boxcli

  A command line interface for interacting with the Box API.

  Language:JavaScript22959

• qtltools/qtltools

  A complete tool set for molecular QTL discovery and analysis

  Language:C++5122

• Shians/NanoMethViz

  Language:R241

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++53564

• daler/gffutils

  GFF and GTF file manipulation and interconversion

  Language:Python28978

• nanoporetech/modkit

  A bioinformatics tool for working with modified bases

  Language:Rust1508

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python43547

• wdecoster/nanopack

  An overview of all nanopack tools

  Language:Python21415

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++7111

• p4rkerw/SALSA

  Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts

  Language:Shell61

• odelaneau/shapeit4

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++9018

• curl/curl

  A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET, TFTP, WS and WSS. libcurl offers a myriad of powerful features

  Language:C36k6.4k

• Zhen-Miao/PACS

  Probability Model of Accessible Chromatin of Single cells

  Language:R62