Pinned Repositories
analysis-scripts
cPecan
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
ESCAPE
Ensemble Single Cell Analysis Pipeline: ensemble method to remove ambient RNA, empty droplets, doublets, and imputation.
scAlign
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
sentiment-analysis-on-movie-reviews
vascular-analysis
Comparative-Annotation-Toolkit
hal-grpc-server
quick-tree-check
Fast phylogeny estimation/verification using alignment-free distances.
cnk113's Repositories
cnk113/vascular-analysis
cnk113/analysis-scripts
cnk113/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
cnk113/aneu-analysis
cnk113/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
cnk113/cacoa
Single-cell Case Control Analysis
cnk113/CATALYST
Cytometry dATa anALYsis Tools
cnk113/CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
cnk113/dynast-release
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
cnk113/EWCE
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
cnk113/freebarcodes
FREE Divergence Error-Correcting DNA Barcodes
cnk113/Group_clone
Computational strategy for identifying clonal cells in single-cell CRISPR screen.
cnk113/hdWGCNA
High dimensional weighted gene co-expression network analysis
cnk113/muscat
Multi-sample multi-group scRNA-seq analysis tools
cnk113/Nanosensus
cnk113/NextClone
Nextflow pipeline for extracting and counting clonal barcodes
cnk113/project1
Building a FAST[AQ] Parser + Building a DNA -> RNA Transcriber
cnk113/project2
Project 2 BFS
cnk113/project3
Project 3: Minimum Spanning Trees
cnk113/project4
Project 4: Needleman-Wunsch Global Alignment
cnk113/project5
Implementation of KMeans and Silhouette Scoring
cnk113/project6
logistic regression
cnk113/project7
Final Project: Neural Network
cnk113/psix
cnk113/rolypoly
Method for identifying trait-relevant gene annotations from GWAS summary statistics.
cnk113/sc3d
cnk113/Scissor
Scissor package
cnk113/thalamus-analysis
cnk113/TREX
Simultaneous lineage TRacking and EXpression profiling of single cells using RNA-seq
cnk113/xenium_barcode_generation