SeuratToExpressionSet error with seurat v5
Prathyusha-konda opened this issue · 0 comments
Prathyusha-konda commented
Hi,
Thank you for the great tool. I noticed that the SeuratToExpressionSet doesn't seem to work with seurat v5 objects. I was wondering if there is a work around or fix for this? Thank you!!
sc.eset <- BisqueRNA::SeuratToExpressionSet(ref_obj, delimiter="-", position=2, version="v3")
Split sample names by "-" and checked position 2. Found 5 individuals.
Example: "AAACCTGAGGGTCTCC-1" corresponds to individual "1".
Error in GetAssayData():
! GetAssayData doesn't work for multiple layers in v5 assay.