Can SyMap's syntenty result be used as chain file in Crossmap?
Zhuxitong opened this issue · 0 comments
Zhuxitong commented
Dear author：
I am wondering if the syntenty results from SyMap can be used or converted to a chain file and then used in Crossmap? I found the chain files prepared mainly in animal genomes and SyMap is more appropriate to find genome syntenty in plants. What I want to do is to convert some peaks position from one plant assembly to another plant assembly. So is it possilbe to use SyMap's results as the chain file for Crossmap?