cumc-dbmi/cehr-bert

Issues

• Create a wiki page on how to create a new prediction task using the spark framework

  #12 opened 15 days ago by ChaoPang
  1

• Error when pretraining data

  #45 opened a year ago by ChungsooKim
  5

• Syntax error when creating training data

  #44 opened a year ago by schuemie
  2

• Create unit-tests for tensorflow layers

  #39 opened a year ago by ChaoPang
  0

• Removed temporal tensorflow layers that are not used

  #42 opened a year ago by ChaoPang
  0

• Switch from our own implementation of MultiHeadAttention to the one created by tensorflow

  #36 opened a year ago by ChaoPang
  0

• Remove the experimental code on temporal bert model/layer/trainer

  #32 opened a year ago by ChaoPang
  0

• Use-case of the model

  #2 opened 2 years ago by Shahriarnz14
  3

• The model trainer doesn't work when the use_dask option is enabled

  #30 opened a year ago by ChaoPang
  0

• Tokenizer doesn't work properly if the OMOP instance contains "concept_id=0"

  #27 opened a year ago by ChaoPang
  0

• Dependency on visit_occurrence_id?

  #22 opened a year ago by schuemie
  0

• Unable to finish tutorial: can run prediction evaluation

  #20 opened 2 years ago by schuemie
  1

• Add JTDS jar for pyspark to the repo

  #18 opened 2 years ago by ChaoPang
  0

• Missing script to download omop tables

  #16 opened 2 years ago by egillax
  1

• Google form for request for synthea dataset

  #14 opened 2 years ago by xj2193
  2

• Upload Synthea data in OMOP format

  #5 opened 2 years ago by ChaoPang
  1

• Add documentation on how to use the spark framework

  #10 opened 2 years ago by ChaoPang
  0

• Update age normalization method in sequence based model evaluator

  #6 opened 2 years ago by xj2193
  0

• Update age normalization method in frequency based model evaluator

  #7 opened 2 years ago by xj2193
  0