mzIdentML EnzymeName with cvParam
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jj-umn commented
I was trying to use ProteoWizard idconvert to convert the Morpheus mzid output to pep.xml for pyQuant.
idconvert expects an EnzymeName tag with a cvParam.
The Morpheus maid has:
% idconvert -o outdir2 --pepXML morpheus.mzid
format: pepXML
outputPath: outdir2
extension: .pepXML
filenames:
morpheus.mzid
processing file: morpheus.mzid
writing output file: outdir2/morpheus.pepXML
Error writing analysis 1 in "morpheus.mzid":
[pepXMLSpecificity] No case supporting enzyme "CVID_Unknown"
idconvert succeeds if I edit morpheus.mzid to add the EnzymeName tag:
cwenger commented
Added EnzymeName and SiteRegexp nodes (read from proteases.tsv) to mzIdentML output. Updated proteases.tsv with this data from PSI-MS. This should fix the idconvert error.