Pinned Repositories
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
bioCode
bioconda-recipes
Conda recipes for the bioconda channel.
biomaRt
R package providing query functionality to BioMart instances like Ensembl
chenlab-training
Datathon
Repository for NUS-MIT Datathon 2017 Team 02
ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
markdown-lint
Markdown Lint Tool / Checker Documentation by Mark Harrison (Manuscripts Edition)
mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
NA12878
Data and analysis for NA12878 genome on nanopore
cying111's Repositories
cying111/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
cying111/bioCode
cying111/bioconda-recipes
Conda recipes for the bioconda channel.
cying111/biomaRt
R package providing query functionality to BioMart instances like Ensembl
cying111/chenlab-training
cying111/Datathon
Repository for NUS-MIT Datathon 2017 Team 02
cying111/ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
cying111/markdown-lint
Markdown Lint Tool / Checker Documentation by Mark Harrison (Manuscripts Edition)
cying111/mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
cying111/NA12878
Data and analysis for NA12878 genome on nanopore
cying111/NanoCount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
cying111/nanorna
cying111/nanorna-bam
Basic downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts
cying111/nanoseq
UNDER CONSTRUCTION: Nanopore demultiplexing, QC and alignment pipeline
cying111/nf_example
Simple Nextflow scripts for a workshop
cying111/open-data-registry
A registry of publicly available datasets on AWS
cying111/proActiv
Estimation of Promoter Activity from RNA-Seq data
cying111/pychopper
A tool to identify full length cDNA reads
cying111/sg-nex-data-1
cying111/test-datasets
Test data to be used for automated testing with the nf-core pipelines