cying111

cying111's Stars

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k24823989

• MIT-LCP/mimic-code

  MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

  Language:Jupyter Notebook2.6k1351.2k1.5k

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k851.1k416

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k18241619

• crazyhottommy/RNA-seq-analysis

  RNAseq analysis notes from Ming Tang

  Language:Python945787301

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML945898211

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++78038835165

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python4371234447

• nanopore-wgs-consortium/NA12878

  Data and analysis for NA12878 genome on nanopore

  Language:Python375538792

• GoekeLab/bioinformatics-workflows

  minimal example implementations for bioinformatics workflow managers

  Language:Python26112245

• bcgsc/NanoSim

  Nanopore sequence read simulator

  Language:Python2471817757

• GoekeLab/awesome-nanopore

  A curated list of awesome nanopore analysis tools.

  23918245

• GoekeLab/bambu

  Reference-guided transcript discovery and quantification for long read RNA-Seq data

  Language:R190719624

• GoekeLab/xpore

  Identification of differential RNA modifications from nanopore direct RNA sequencing

  Language:Python138914823

• liyu95/DeepSimulator

  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

  Language:C11685140

• GoekeLab/sg-nex-data

  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

  Language:R11171925

• GoekeLab/m6anet

  Detection of m6A from direct RNA-Seq data

  Language:Python108711119

• a-slide/NanoCount

  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2

  Language:Python564375

• Nazeeefa/awesome-sequencing-tech-papers

  A collection of publications on comparison of high-throughput sequencing technologies.

  26413

• mikelove/alpine

  Modeling and correcting fragment sequence bias for RNA-seq

  Language:R24596

• karel-brinda/NanoSim-H

  NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.

  Language:Python173136

• bcgsc/Trans-NanoSim

  Oxford nanopore transcriptome read simulator

  Language:Python51185

• arynchoong/Datathon

  Repository for NUS-MIT Datathon 2017 Team 02

  Language:Python2403