czbiohub-sf/cerebra

vcf '20' field is sometimes malformed

Closed this issue · 1 comments

lincoln-harris commented
  • seeing 0/0:46:46 instead of 1/1:0,2:2:6:84,6,0
  • relevant when trying to extract AD, in check_coverage_whole_gene module
  • not sure what this edge case means...
  • ignoring it for now, with try/except block
lincoln-harris commented

resolved, with use of pyvcf