/IIFDTI

the codes for paper "IIFDTI: predicting drug target interaction through interactive and independent features based on attention mechanism"

Primary LanguagePython

IIFDTI

an end-to-end deep learning-based method named IIFDTI is developed to predict DTIs based on independent features of drug-target pairs and interactive features of their substructures.

Requirements

  • python >= 3.5
  • torch >= 1.4.0
  • RDkit >= 2019.03.30
  • gensim >= 3.4.0
  • numpy >= 1.16.1
  • pandas >= 1.1.4
  • transformers >= 3.1.0

Using

  1. model.py: the construction of the neural network
  2. data_preprocess: Process the data to get the input of the model
  3. main.py: start file for model training

Contact

if you have any questions or suggestions with the codes, please let us know, Contact Zhongjian Cheng at zj_cheng@qq.com