error running morfee.annotation()

[ElenaBiagi]

Greetings,

I am trying to run MORFEE on a previously Annovar-annotated vcf, here named "my_vcf".
I followed the instructions in the README.md, but when reaching the following command

morfee.annotation(my_vcf, MORFEE_DATA)

I got this error message Error in normalizeDoubleBracketSubscript(i, x, exact = exact, allow.NA = TRUE, : subscript is out of bounds and the execution stops after 15749 variants.

Please let me know how i could fix this error.

Thanks in advance !

[daissi]

Hi,

It looks like an issue with a dependency of MORFEE.
Could you send me a minimal anonymized dataset to reproduce this issue?
I guess there is an issue with variant 15750, so a vcf with variants from 15745 to 15755 should be fine.

Best,
Dylan

[ElenaBiagi]

Thank you very much for your celerity in answering.
I have already tried removing the variant 15750, but the problem remained the same. I thought it could be due to an issue with the variant 15751 as well.
I'll try to reduce the file and I will send it to you as soon as possible.

Thanks again