error running morfee.annotation()
Closed this issue · 2 comments
Greetings,
I am trying to run MORFEE on a previously Annovar-annotated vcf, here named "my_vcf"
.
I followed the instructions in the README.md, but when reaching the following command
morfee.annotation(my_vcf, MORFEE_DATA)
I got this error message Error in normalizeDoubleBracketSubscript(i, x, exact = exact, allow.NA = TRUE, : subscript is out of bounds
and the execution stops after 15749 variants.
Please let me know how i could fix this error.
Thanks in advance !
Hi,
It looks like an issue with a dependency of MORFEE.
Could you send me a minimal anonymized dataset to reproduce this issue?
I guess there is an issue with variant 15750, so a vcf with variants from 15745 to 15755 should be fine.
Best,
Dylan
Thank you very much for your celerity in answering.
I have already tried removing the variant 15750, but the problem remained the same. I thought it could be due to an issue with the variant 15751 as well.
I'll try to reduce the file and I will send it to you as soon as possible.
Thanks again