Pinned Repositories
bulkrna
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
easylayout
interactive force-directed graph layouts within RStudio
euryale
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
ewing-mra-netinfer
intro_deep-learning
KeggPathwayAPs
Systems Biology Approaches in the Investigation of Articulation Points in Kegg Metabolic Pathways
LeadNPC
Systems Biology-Based Analysis Indicates Global Transcriptional Impairment in Lead-Treated Human Neural Progenitor Cells
MEDUSA
Metagenomic pipeline managed by snakemake
neurotransmissionevolution
Research compendium for Viscardi et al, 2020.
trastuzumab_dge
DGE for trastuzumab-treated expression datasets
dalmolingroup's Repositories
dalmolingroup/MEDUSA
Metagenomic pipeline managed by snakemake
dalmolingroup/bulkrna
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
dalmolingroup/euryale
A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
dalmolingroup/easylayout
interactive force-directed graph layouts within RStudio
dalmolingroup/intro_deep-learning
dalmolingroup/neurotransmissionevolution
Research compendium for Viscardi et al, 2020.
dalmolingroup/ewing-mra-netinfer
dalmolingroup/intro-single-cell
Introduction to single-cell RNA-seq analysis
dalmolingroup/KeggPathwayAPs
Systems Biology Approaches in the Investigation of Articulation Points in Kegg Metabolic Pathways
dalmolingroup/Network-lncRNA-mCRPC
Scripts used in the analyzes of the paper titled "Revealing metastatic castration-resistant prostate cancer (mCRPC) master regulator through lncRNA-centered regulatory network".
dalmolingroup/annotate
Python script to annotate each query using the best alignment for which a mapping is known
dalmolingroup/gene-regulatory-networks
dalmolingroup/MB_MRA
dalmolingroup/meta_taraoceans
Bioinformatics research project on metagenomic in samples from TaraOceans expediction
dalmolingroup/transcriptogramer
R package for transcriptional analysis based on transcriptograms
dalmolingroup/trastuzumab_dge
DGE for trastuzumab-treated expression datasets
dalmolingroup/ComparisonMEGANxMEDUSA
dalmolingroup/geneplast.data.string.v110
dalmolingroup/KEGG-Pathway-Viewer
Tool to visualize KEGG networks
dalmolingroup/LeadNPC
Systems Biology-Based Analysis Indicates Global Transcriptional Impairment in Lead-Treated Human Neural Progenitor Cells
dalmolingroup/mdd-paper
Sex-specific transcriptional alteration profile of MDD
dalmolingroup/MicroView
A reporting tool for aggregating results from taxonomic classification analyses
dalmolingroup/seriation
C code to find a suitable linear order for a set of proteins
dalmolingroup/.github
dalmolingroup/cochineal_16s
Analysis of 16S data on the cochineal insect
dalmolingroup/curso-shell
Curso de Introdução à Linha de Comando, ministrado como parte da Semana de Portas Abertas do PPg-Bioinfo
dalmolingroup/dalmolingroup.github.io
Dalmolin Group's website
dalmolingroup/essential_genes_paper
Repository for the ancestry analysis of essential genes in eukaryotes
dalmolingroup/MEDUSA_supplements
A hub for information related to the manuscript "MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences"