[BUG] `launchResultsExplorer` Fails To Ingest Zipfile
Opened this issue · 2 comments
Describe the bug
When I try to upload a zip file to the results explorer with my results from generating treatment patterns, the explorer does not generate any images and hangs on this screen:
Also notice how the page is greyed out -- it is not like that before uploading.
To Reproduce
There really isn't code to show for this behavior as I can upload a zip file to the location the explorer wants me to and then it indefinitely hangs. Here's the error I see from the console:
> launchResultsExplorer()
Listening on http://127.0.0.1:6360
Warning in unzip(zipfile = private$.reactiveValues$dataPath[[i]], files = fileName, :
requested file not found in the zip file
Warning: Error in file: invalid 'description' argument
3: runApp [/tmp/RtmpWQD5w0/R.INSTALLd05c34ca6cb1/shiny/R/runapp.R#388]
2: print.shiny.appobj [/tmp/RtmpWQD5w0/R.INSTALLd05c34ca6cb1/shiny/R/shinyapp.R#553]
1: <Anonymous>
Warning in unzip(zipfile = private$.reactiveValues$dataPath[[i]], files = fileName, :
requested file not found in the zip file
Warning: Error in file: invalid 'description' argument
3: runApp [/tmp/RtmpWQD5w0/R.INSTALLd05c34ca6cb1/shiny/R/runapp.R#388]
2: print.shiny.appobj [/tmp/RtmpWQD5w0/R.INSTALLd05c34ca6cb1/shiny/R/shinyapp.R#553]
1: <Anonymous>Additionally, here is my R version information:
R version 4.3.1 (2023-06-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Fedora Linux 38 (Thirty Eight)
Matrix products: default
BLAS/LAPACK: FlexiBLAS OPENBLAS-OPENMP; LAPACK version 3.11.0
locale:
[1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
[3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
[5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8
[7] LC_PAPER=en_US.utf8 LC_NAME=en_US.utf8
[9] LC_ADDRESS=en_US.utf8 LC_TELEPHONE=en_US.utf8
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=en_US.utf8
time zone: America/New_York
Running under: Fedora Linux 38 (Thirty Eight)
Matrix products: default
BLAS/LAPACK: FlexiBLAS OPENBLAS-OPENMP; LAPACK version 3.11.0
locale:
[1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
[3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
[5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8
[7] LC_PAPER=en_US.utf8 LC_NAME=en_US.utf8
[9] LC_ADDRESS=en_US.utf8 LC_TELEPHONE=en_US.utf8
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=en_US.utf8
time zone: America/New_York
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] plotly_4.10.4 ggplot2_3.5.0 shinydashboard_0.7.2
[4] shiny_1.8.0 TreatmentPatterns_2.6.2 tibble_3.2.1
[7] DatabaseConnector_6.3.2 CirceR_1.3.2 dplyr_1.1.4
loaded via a namespace (and not attached):
[1] gtable_0.3.4 bslib_0.6.1 rjson_0.2.21
[4] htmlwidgets_1.6.4 rJava_1.0-11 vctrs_0.6.5
[7] tools_4.3.1 generics_0.1.3 fansi_1.0.6
[10] RSQLite_2.3.4 blob_1.2.4 pkgconfig_2.0.3
[13] data.table_1.15.0 checkmate_2.3.1 dbplyr_2.4.0
[16] lifecycle_1.0.4 compiler_4.3.1 stringr_1.5.1
[19] sunburstR_2.1.8 munsell_0.5.0 fontawesome_0.5.2
[22] codetools_0.2-19 httpuv_1.6.13 sass_0.4.8
[25] htmltools_0.5.7 lazyeval_0.2.2 crayon_1.5.2
[28] jquerylib_0.1.4 later_1.3.2 pillar_1.9.0
[31] tidyr_1.3.0 ellipsis_0.3.2 cachem_1.0.8
[34] mime_0.12 tidyselect_1.2.0 digest_0.6.34
[37] stringi_1.8.3 purrr_1.0.2 fastmap_1.1.1
[40] grid_4.3.1 colorspace_2.1-0 cli_3.6.2
[43] magrittr_2.0.3 utf8_1.2.4 withr_2.5.2
[46] scales_1.3.0 promises_1.2.1 backports_1.4.1
[49] bit64_4.0.5 lubridate_1.9.3 timechange_0.2.0
[52] httr_1.4.7 googleVis_0.7.1 networkD3_0.4
[55] igraph_1.6.0 bit_4.0.5 CohortGenerator_0.8.1
[58] hms_1.1.3 memoise_2.0.1 SqlRender_1.16.1
[61] viridisLite_0.4.2 rlang_1.1.3 Rcpp_1.0.12
[64] xtable_1.8-4 glue_1.7.0 DBI_1.2.1
[67] ParallelLogger_3.3.0 renv_1.0.3 jsonlite_1.8.8
[70] Andromeda_0.6.4 R6_2.5.1 Expected behavior
I should upload my generated zip file to the tool and then be able to see sankey and sunburst diagrams.
Additional context
None
Can report I see this as well, and have been beaten to it by the noble prince.
I see that you are on version 2.6.2, could you try updating to the latest version (2.6.5), it's available on CRAN?