dauparas/ProteinMPNN

How to prepare input files for fine-tuning with multimers?

gezmi opened this issue · 1 comments

gezmi commented

Hi,

I would like to fine-tune on certain complexes, always knowing which chain I want to be masked. How should I input this?

How do the list.csv, test_cluster and valid_cluster change for multimers if at all? I could not find anything about this in the training directory. What doees that mean?

Thank you!

@gezmi Let me know if you've figured it out