dauparas/ProteinMPNN

What is the difference between --conditional_probs_only_backbone and --unconditional_probs_only

tsjain opened this issue · 1 comments

From the command line help, they both give p(s_i given backbone), but the latter option additionally states that the numbers come from the forward pass.

Can you explain what the difference is between the two options?

@tsjain my guess is that unconditional_probs_only ignores the mask that you provide, as e.g. in example 7.