david-castillo

Pinned Repositories

TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Language:Python100 17 25461
TADkit
3D Genome Browser
Language:JavaScript31 17 4410
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1.6k 96 1.9k3.2k
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
colvars
Collective variables module for molecular simulation and analysis programs
Language:C++00
lammps
Public development project of the LAMMPS MD software package
Language:C++00
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Language:Python11
TADdyn
Language:Python00
TADkit
3D Genome Browser
Language:JavaScript00
lammps
Public development project of the LAMMPS MD software package
Language:C++2.2k 118 1.1k1.7k

david-castillo's Repositories

david-castillo/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Language:Python11
david-castillo/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
david-castillo/colvars
Collective variables module for molecular simulation and analysis programs
Language:C++00
david-castillo/lammps
Public development project of the LAMMPS MD software package
Language:C++00
david-castillo/TADdyn
Language:Python00
david-castillo/TADkit
3D Genome Browser
Language:JavaScript00