Pinned Repositories
assoctool
Association tool
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
bdcatalyst-demo
cgrFunctional
chimerascan
Automatically exported from code.google.com/p/chimerascan
cutadapt
cutadapt removes adapter sequences from sequencing reads
tvc
Torrent Variant Caller
fragpipe-proteomics-pipeline-tutorial
CWL descriptions for FragPipe Proteomics Pipline
somatic_mutation_analysis
A basic maftools workflow in CWL
davidroberson's Repositories
davidroberson/tvc
Torrent Variant Caller
davidroberson/cgrFunctional
davidroberson/assoctool
Association tool
davidroberson/bdcatalyst-demo
davidroberson/cwl_apps
Collection of CWL apps descriptions. Some are in progress.
davidroberson/CIRCexplorer2
circular RNA analysis toolset
davidroberson/code_docker_lib
Dockerized tools for the Center for Omics Discovery and Epidemiology
davidroberson/dbgap2x
davidroberson/DeepBlues
Artificially generated 12-bar blues melodies using Recurrent Neural Networks
davidroberson/demo-gwas
CWL repository
davidroberson/docker_test
davidroberson/Epigenomics_CWL
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
davidroberson/exceRpt
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
davidroberson/gene-expression-and-heart-failure
Differential expression & pathway analysis of heart failure
davidroberson/hotspot3d
3D hotspot mutation proximity analysis tool
davidroberson/ICI
davidroberson/Individual_Level_PrediXcan
davidroberson/MarkovBlues
Artificially generated 12-bar blues melodies using Variable-length Markov models and Probabilistic Suffix Trees
davidroberson/MEGAnE
MEGAnE
davidroberson/mtag
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
davidroberson/my-tool
my project
davidroberson/predixcan_tools
davidroberson/rpgQTL
davidroberson/STAR_protocols_GV_calling
For questions about the scripts in this project please contact Divya Sahu (dsahu@uab.edu or sahu.divya786@gmail.com)
davidroberson/timer-tab
Source code of Timer Tab
davidroberson/TitanCNA
A Factorial-HMM for analyzing subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer. See https://github.com/gavinha/TitanCNA-utils for a convenient script to run TitanCNA.
davidroberson/TS
Torrent Suite
davidroberson/vep
VEP Workflow with CWL descriptions
davidroberson/workflow-inference-compiler
A domain specific language for creating scientific pipelines
davidroberson/workflow-notebooks