"git repo not given. Stop here." When attempting to start from pre-downloaded model
aianta opened this issue · 0 comments
aianta commented
I followed the instructions here:
https://hub.docker.com/r/aksw/dld-dist-dbpedia
and downloaded the en language model using this command:
docker run --rm -v dbpedia_en:/dbpedia-download:z aksw/dld-dist-dbpedia download -l en
This process completed successfully, but then when I run
docker run -ti -v /var/run/docker.sock:/var/run/docker.sock:z -v dbpedia_en:/dbpedia-download:z --name dld-dbpedia aksw/dld-dist-dbpedia run-dld
I get the following:
DLD INFO adding volumes from meta-container: ['dld-dbpedia']
DLD INFO adding volumes from meta-container: ['dld-dbpedia']
DLD INFO Finished preparing compose setup. Changing to '/dld-dbpedia-wd' and performing 'docker-compose up'...
Starting dlddbpediawd_store_1
Starting dlddbpediawd_load_1
Attaching to dlddbpediawd_store_1, dlddbpediawd_load_1
store_1 | Reuse existing virtuoso.ini in database directory
store_1 | setting virtuoso dba password...
store_1 |
store_1 | Mon Mar 28 2022
store_1 | 19:32:13 { Loading plugin 1: Type `plain', file `wikiv' in `/usr/lib/virtuoso/hosting'
store_1 | 19:32:13 FAILED plugin 1: Unable to locate file }
store_1 | 19:32:13 { Loading plugin 2: Type `plain', file `mediawiki' in `/usr/lib/virtuoso/hosting'
store_1 | 19:32:13 FAILED plugin 2: Unable to locate file }
store_1 | 19:32:13 { Loading plugin 3: Type `plain', file `creolewiki' in `/usr/lib/virtuoso/hosting'
store_1 | 19:32:13 FAILED plugin 3: Unable to locate file }
store_1 | 19:32:13 OpenLink Virtuoso Universal Server
store_1 | 19:32:13 Version 07.20.3213-pthreads for Linux as of May 12 2015
store_1 | 19:32:13 uses parts of OpenSSL, PCRE, Html Tidy
store_1 | 19:32:13 Starting for DBA password change.
store_1 | 19:32:13 Database version 3126
store_1 | 19:32:13 SQL Optimizer enabled (max 1000 layouts)
store_1 | 19:32:14 Compiler unit is timed at 0.000098 msec
store_1 | 19:32:14 Roll forward started
store_1 | 19:32:14 Roll forward complete
store_1 | 19:32:15 PL LOG: Can't get list of vad packages in /usr/share/virtuoso/vad/
store_1 | 19:32:15 The DBA password is changed.
store_1 | 19:32:15 Checkpoint started
store_1 | 19:32:15 Checkpoint finished, log reused
store_1 | 19:32:15 Server exiting
store_1 | starting virtuoso...
store_1 |
store_1 | Mon Mar 28 2022
store_1 | 19:32:15 { Loading plugin 1: Type `plain', file `wikiv' in `/usr/lib/virtuoso/hosting'
store_1 | 19:32:15 FAILED plugin 1: Unable to locate file }
store_1 | 19:32:15 { Loading plugin 2: Type `plain', file `mediawiki' in `/usr/lib/virtuoso/hosting'
store_1 | 19:32:15 FAILED plugin 2: Unable to locate file }
store_1 | 19:32:15 { Loading plugin 3: Type `plain', file `creolewiki' in `/usr/lib/virtuoso/hosting'
store_1 | 19:32:15 FAILED plugin 3: Unable to locate file }
store_1 | 19:32:15 OpenLink Virtuoso Universal Server
store_1 | 19:32:15 Version 07.20.3213-pthreads for Linux as of May 12 2015
store_1 | 19:32:15 uses parts of OpenSSL, PCRE, Html Tidy
store_1 | 19:32:15 Database version 3126
store_1 | 19:32:15 SQL Optimizer enabled (max 1000 layouts)
store_1 | 19:32:16 Compiler unit is timed at 0.000098 msec
store_1 | 19:32:16 Roll forward started
store_1 | 19:32:16 Roll forward complete
store_1 | 19:32:16 PL LOG: Can't get list of vad packages in /usr/share/virtuoso/vad/
store_1 | 19:32:16 Checkpoint started
store_1 | 19:32:16 Checkpoint finished, log reused
store_1 | 19:32:16 HTTP/WebDAV server online at 8890
store_1 | 19:32:16 Server online at 1111 (pid 13)
load_1 | CRON_JOB=
load_1 | /virtuoso/cronscript.sh: line 4: [: =: unary operator expected
load_1 | [ERROR] git repo not given. Stop here.
Running the sample SPARQL query:
SELECT ?name ?birth ?death ?person WHERE { ?person dbo:birthPlace :Berlin . ?person dbo:birthDate ?birth . ?person foaf:name ?name . ?person dbo:deathDate ?death . FILTER (?birth < "1900-01-01"^^xsd:date) . } ORDER BY ?name
Returns no results. Which to my understanding suggests the downloaded data was not loaded. According to docker the dbpedia_en volume does have some data on it:
dbpedia_en 4.874GB
Though that seems smaller than I expected.
Is there something I'm missing?
I'm running off wsl2, with:
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 18.04.3 LTS
Release: 18.04
Codename: bionic
If it matters, I ran the data download command from the windows host and the run-dld command from the Ubuntu side as there were permission issues running it from the windows side.
Docker engine info:
Client:
Context: default
Debug Mode: false
Plugins:
buildx: Docker Buildx (Docker Inc., v0.7.1)
compose: Docker Compose (Docker Inc., v2.2.3)
scan: Docker Scan (Docker Inc., v0.17.0)
WARNING: Plugin "/usr/libexec/docker/cli-plugins/docker-app" is not valid: failed to fetch metadata: fork/exec /usr/libexec/docker/cli-plugins/docker-app: no such file or directory
Server:
Containers: 6
Running: 5
Paused: 0
Stopped: 1
Images: 5
Server Version: 20.10.12
Storage Driver: overlay2
Backing Filesystem: extfs
Supports d_type: true
Native Overlay Diff: true
userxattr: false
Logging Driver: json-file
Cgroup Driver: cgroupfs
Cgroup Version: 1
Plugins:
Volume: local
Network: bridge host ipvlan macvlan null overlay
Log: awslogs fluentd gcplogs gelf journald json-file local logentries splunk syslog
Swarm: inactive
Runtimes: runc io.containerd.runc.v2 io.containerd.runtime.v1.linux
Default Runtime: runc
Init Binary: docker-init
containerd version: 7b11cfaabd73bb80907dd23182b9347b4245eb5d
runc version: v1.0.2-0-g52b36a2
init version: de40ad0
Security Options:
seccomp
Profile: default
Kernel Version: 5.10.102.1-microsoft-standard-WSL2
Operating System: Docker Desktop
OSType: linux
Architecture: x86_64
CPUs: 14
Total Memory: 31.32GiB
Name: docker-desktop
ID: 7CNA:SSCB:N5XF:7J4D:EASR:KG6C:KUSG:SAN7:EEAE:2ZBP:PMYR:KNZN
Docker Root Dir: /var/lib/docker
Debug Mode: false
Registry: https://index.docker.io/v1/
Labels:
Experimental: false
Insecure Registries:
hubproxy.docker.internal:5000
127.0.0.0/8
Live Restore Enabled: false
WARNING: No blkio throttle.read_bps_device support
WARNING: No blkio throttle.write_bps_device support
WARNING: No blkio throttle.read_iops_device support
WARNING: No blkio throttle.write_iops_device support