dcgerard
Statistician interested in multivariate analysis, hierarchical/empirical Bayesian modeling, and biological applications.
American UniversityWashington, DC
Pinned Repositories
hwep
Hardy-Weinberg Equilibrium in Polyploids
ldsep
Linkage Disequilibrium Shrinkage Estimation for Polyploids
seqgendiff
Sequence Generation for Differential Expression Analysis and Beyond
stat234
Course lectures, code, and examples for stat 234
stat_412_612
Teaching website for STAT 412/612 taught in Spring 2019 at American University.
tensr
Covariance Inference and Decompositions for Tensor Datasets
UltimateDeconvolution
An R package for simple EM algorithms to solve the deconvoultion problem in Gaussian mixtures.
updog
Flexible Genotyping of Polyploids using Next Generation Sequencing Data
updogAlpha
Old updog code.
vicar
Various Ideas for Confounder Adjustment in Regression
dcgerard's Repositories
dcgerard/updog
Flexible Genotyping of Polyploids using Next Generation Sequencing Data
dcgerard/vicar
Various Ideas for Confounder Adjustment in Regression
dcgerard/seqgendiff
Sequence Generation for Differential Expression Analysis and Beyond
dcgerard/ldsep
Linkage Disequilibrium Shrinkage Estimation for Polyploids
dcgerard/tensr
Covariance Inference and Decompositions for Tensor Datasets
dcgerard/stat_412_612
Teaching website for STAT 412/612 taught in Spring 2019 at American University.
dcgerard/hwep
Hardy-Weinberg Equilibrium in Polyploids
dcgerard/hwesupp
Supplementary Material for Gerard (2022)
dcgerard/segtest
Tests for segregation distortion in F1 tetraploid populations
dcgerard/menbayes
Tests for Segregation Distortion in Tetraploids
dcgerard/authesis
American University LaTeX Thesis Template
dcgerard/dcgerard.github.io
The code for David Gerard's website.
dcgerard/dot_files
A copy of my favorite dot files.
dcgerard/fitPoly
Development repository of the R package fitPoly.
dcgerard/gda
Genetic Data Analysis
dcgerard/ginormal
Density and generation from the generalized inverse normal (GIN) distribution.
dcgerard/hexocto
Code from Wang et al (2021) and Wang et al (2022) in package form.
dcgerard/hwesims
Reproduce the analysis in Gerard (2023).
dcgerard/KDRIsweetpotatoXushu18S1LG2017
Data from Shirasawa et. al. (2017)
dcgerard/mbanalysis
Analysis scripts for "Tests for Segregation Distortion in Tetraploid F1 Populations".
dcgerard/NSF-U-Statistics
Repository containing the results of the NSF Grant No. 2132247.
dcgerard/phwelike
Code from <https://github.com/LiboJiang/DoubleReduction> in package form.
dcgerard/r4ds
R for data science: a book
dcgerard/reproduce_genotyping
Reproduce the results from Gerard et al. (2018)
dcgerard/reproduce_prior_sims
Reproduce the results of Gerard and Ferrão (2019)
dcgerard/RLCP
The project aims at developing a locally-weighted conformal prediction algorithm, which can attain meaningful local coverage guarantees in a model-free manner.
dcgerard/rmbayes_sims
Scripts to reproduce the results of Gerard (2023).
dcgerard/SLiM-Extras
Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
dcgerard/stat_320
Stat 320: Biostatistics Course Website
dcgerard/stat_415_615
Course website for STAT 415/615 Regression