Why do we have the protein reordering
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dagap commented
In your dataloader, you have the following lines:
self.alphabet = "ACDEFGHIKLMNPQRSTVWY"
self.reorder_alphabet = "DEKRHNQSTPGAVILMCFYW"
Could you please comment on this alphabet reordering? I guess the ordering orders them by some properties of the amino acids but I am not sure what purpose it is serving in the code.