Create more descriptive output for when dependency-tree files are needed prior to execution

[viktigpetterr]

At the moment the output is the following when dependency-tree files are missing:

 $io->warning("Skipping {$absolutePathname}.\n\nFound file which requires that all files needs to be uploaded. Please enable the {$optionNameUploadAllFiles} option if you want to scan this file.");

Really it should point the user to generate the connected dependency-tree file prior to execution.