denis-yuen

OICR Bioinformatics Software Developer

@OICR_newsCanada

Pinned Repositories

2017-cloud-workflows-misc
0 1 00
dockstore-whalesay-wdl-only
Sample dockstore whalesay repo for testing
Language:WDL2 2 04
food-for-love-in-spain
An experimental site for nostalgia and amusement.
Language:JavaScript1 1 00
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0 1 00
hello-world-workflow
For Dockstore testing, this is now tested to be compatible with Draft3 of CWL
Language:Java1 2 00
icy-blackberry
Example command line tool for the HCA Hackathon
Language:Jupyter Notebook1 1 00
dockstore
An app store for scientific workflows, tools, notebooks, and services
Language:Java119 22 3.5k27
dockstore-ui2
Website user interface for Dockstore in Angular2
Language:TypeScript16 6 016
tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
Language:Shell30 32 8218
seqware
This is the SeqWare Project's main repo.
Language:Java27 26 1517

denis-yuen's Repositories

denis-yuen/dockstore-whalesay-wdl-only
Sample dockstore whalesay repo for testing
Language:WDL2 2 04
denis-yuen/food-for-love-in-spain
An experimental site for nostalgia and amusement.
Language:JavaScript1 1 00
denis-yuen/amazon-genomics-cli
Language:Go1 0
denis-yuen/ampa-nf
Fast automated prediction of protein antimicrobial regions
Language:Perl1 0
denis-yuen/basic_admixture
A basic workflow to run ADMIXTURE.
Language:WDL0 0
denis-yuen/bcc2020-training
Training materials for our BCC 2020 training workshop.
Language:Common Workflow Language1 0
denis-yuen/bio-cwl-tools
This is a test
Language:Common Workflow Language1 0
denis-yuen/CDPHE-influenza
Language:wdl0 0
denis-yuen/denis-yuen
2 0
denis-yuen/dockstore
Our VM/Docker sharing infrastructure and management component
Language:Java1 0
denis-yuen/dockstore-cli
Command-line interface to dockstore, split out from main repo in version 1.8.0
Language:Java1 0
denis-yuen/dropwizard
A damn simple library for building production-ready RESTful web services.
Language:Java0 0
denis-yuen/fairdataihub.org
Website of the FAIR Data Innovations Hub
Language:TypeScript1 0
denis-yuen/fasp-scripts
Language:Jupyter Notebook1 0
denis-yuen/fetch-dbgap-files
Code to fetch dbGaP files using sra-toolkit
Language:Python0 0
denis-yuen/galaxy-workflow-dockstore-example-1
1 04
denis-yuen/galaxy-workflow-dockstore-example-2
1 04
denis-yuen/gatk
Official code repository for GATK versions 4 and up
Language:Java1 0
denis-yuen/gatk-sv-clinical-example
WDLs for the Clinical GATK-SV pipeline
Language:WDL1 0
denis-yuen/metapipe
Language:Scala2 0
denis-yuen/myco
WIP pipeline built for phylogenic analysis of the Mycobacterium tuberculosis complex (MBTC)
Language:PureBasic0 03
denis-yuen/naughty
DO NOT IMPORT THIS INTO DOCKSTORE, EXCEPT LOCALLY. THIS REPO CONTAINS QUESTIONABLE FILE NAMES
Language:Common Workflow Language1 0
denis-yuen/public_health_bacterial_genomics
Language:WDL1 0
denis-yuen/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
denis-yuen/test-notebooks
Language:Jupyter Notebook0 0
denis-yuen/test-workflows-and-tools
description
Language:Common Workflow Language1 1
denis-yuen/ThreatExchange
Share threat information with vetted partners
Language:C++0 0
denis-yuen/warp
WDL Analysis Research Pipelines
Language:WDL0 0
denis-yuen/workflow-dockstore-yml
A repo that includes .dockstore.yml
Language:Common Workflow Language0 0
denis-yuen/workflow-testing-repo
Language:Shell1 0