matToFastaStitcher in chromosome order
Opened this issue · 1 comments
coopergrace commented
Hello,
Is there a way to specify the conversion from MAF to fasta be in chromosome order please, e.g. via the sequence used as reference? Or is this something that needs to be specified at the MAF construction stage?
Having had a few goes at MAF > fasta, the chromosome order changes each time. Considering the output fasta is one massive sequence, determining chromosome boundaries is impossible.
Cheers
Cooper
lili19911005 commented
I have the same question. Have you solved the problem?