Hope for some suggestions for cutoffs
Opened this issue · 2 comments
Neo-xbx-00 commented
Hello dfguan and your powerful tools purge_dups, I have a 193X Pacbio assembly (by Nextdenovo with default parameters), I got a hist plot like this and wonder how can I set perfect cutoffs for my assembly. For with automatically-setting cutoffs, the size of assembly seems smaller than my estimation. Anyway my estimated heterogeneous ratio is 0.88%.
Neo-xbx-00 commented
Waiting for your nice reply !!!
Neo-xbx-00 commented
calcuts.log
And this is my log file