3.1.3: pytest warnings
kloczek opened this issue · 1 comments
kloczek commented
I'm packaging your module as an rpm package so I'm using the typical PEP517 based build, install and test cycle used on building packages from non-root account.
python3 -sBm build -w --no-isolation- because I'm calling
buildwith--no-isolationI'm using during all processes only locally installed modules - install .whl file in </install/prefix>
- run pytest with PYTHONPATH pointing to sitearch and sitelib inside </install/prefix>
Here is pytest output:
+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-emcee-3.1.3-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-emcee-3.1.3-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra -p no:cacheprovider
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.14, pytest-7.1.3, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/emcee-3.1.3
collected 93 items
src/emcee/tests/integration/test_de.py ... [ 3%]
src/emcee/tests/integration/test_de_snooker.py .. [ 5%]
src/emcee/tests/integration/test_gaussian.py ............ [ 18%]
src/emcee/tests/integration/test_kde.py ... [ 21%]
src/emcee/tests/integration/test_longdouble.py .. [ 23%]
src/emcee/tests/integration/test_stretch.py ..... [ 29%]
src/emcee/tests/integration/test_walk.py .. [ 31%]
src/emcee/tests/unit/test_autocorr.py .... [ 35%]
src/emcee/tests/unit/test_backends.py s..ssss.s [ 45%]
src/emcee/tests/unit/test_blobs.py .......... [ 55%]
src/emcee/tests/unit/test_ensemble.py ....... [ 63%]
src/emcee/tests/unit/test_sampler.py .............................. [ 95%]
src/emcee/tests/unit/test_state.py ... [ 98%]
src/emcee/tests/unit/test_stretch.py . [100%]
============================================================================= warnings summary =============================================================================
src/emcee/tests/unit/test_ensemble.py::TestNamedParameters::test_run_mcmc
/home/tkloczko/rpmbuild/BUILD/emcee-3.1.3/src/emcee/utils.py:23: DeprecationWarning: 'chain' is deprecated. Use 'get_chain()' instead.
deprecation_warning(msg)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= short test summary info ==========================================================================
SKIPPED [1] src/emcee/tests/unit/test_backends.py:64: HDF5 not available
SKIPPED [1] src/emcee/tests/unit/test_backends.py:101: got empty parameter set ['backend', 'dtype', 'blobs'], function test_backend at /home/tkloczko/rpmbuild/BUILD/emcee-3.1.3/src/emcee/tests/unit/test_backends.py:100
SKIPPED [1] src/emcee/tests/unit/test_backends.py:142: got empty parameter set ['backend', 'dtype'], function test_reload at /home/tkloczko/rpmbuild/BUILD/emcee-3.1.3/src/emcee/tests/unit/test_backends.py:141
SKIPPED [1] src/emcee/tests/unit/test_backends.py:186: got empty parameter set ['backend', 'dtype'], function test_restart at /home/tkloczko/rpmbuild/BUILD/emcee-3.1.3/src/emcee/tests/unit/test_backends.py:185
SKIPPED [1] src/emcee/tests/unit/test_backends.py:218: HDF5 not available
SKIPPED [1] src/emcee/tests/unit/test_backends.py:268: HDF5 not available
=========================================================== 87 passed, 6 skipped, 1 warning in 136.15s (0:02:16) ===========================================================Here is list of installed modules in build env
Package Version
----------------------------- -----------------
alabaster 0.7.12
appdirs 1.4.4
asttokens 2.0.5
attrs 22.1.0
Babel 2.10.2
backcall 0.2.0
Brlapi 0.8.3
build 0.8.0
charset-normalizer 2.1.0
click 8.1.3
codespell 2.2.1
cssselect 1.1.0
debugpy 1.6.3
decorator 5.1.1
distro 1.7.0
dnspython 2.2.1
docutils 0.18.1
entrypoints 0.4
executing 1.1.0
extras 1.0.0
fastjsonschema 2.16.1
fixtures 4.0.0
gpg 1.17.1-unknown
greenlet 1.1.2
idna 3.4
imagesize 1.4.1
importlib-metadata 4.12.0
importlib-resources 5.9.0
iniconfig 1.1.1
ipykernel 6.16.0
ipython 8.4.0
jedi 0.18.1
Jinja2 3.1.1
jsonschema 4.16.0
jupyter-cache 0.5.0
jupyter_client 7.3.5
jupyter_core 4.11.1
libcomps 0.1.19
louis 3.23.0
lxml 4.9.1
markdown-it-py 2.1.0
MarkupSafe 2.1.1
matplotlib-inline 0.1.5
mdit-py-plugins 0.3.0
mdurl 0.1.1
myst-nb 0.16.0
myst-parser 0.18.0
nbclient 0.6.8
nbformat 5.6.1
nest-asyncio 1.5.5
numpy 1.23.1
packaging 21.3
parso 0.8.3
pbr 5.9.0
pep517 0.12.0
pexpect 4.8.0
pickleshare 0.7.5
pip 22.2.2
pkgutil_resolve_name 1.3.10
pluggy 1.0.0
prompt-toolkit 3.0.29
psutil 5.9.2
ptyprocess 0.7.0
pure-eval 0.2.2
py 1.11.0
Pygments 2.13.0
PyGObject 3.42.2
pyparsing 3.0.9
pyrsistent 0.18.1
pytest 7.1.3
python-dateutil 2.8.2
pytz 2022.1
PyYAML 6.0
pyzmq 24.0.0
requests 2.28.1
rpm 4.17.0
ruamel.yaml 0.17.21
ruamel.yaml.clib 0.2.6
scour 0.38.2
setuptools 65.4.0
setuptools-scm 7.0.5
six 1.16.0
snowballstemmer 2.2.0
Sphinx 5.2.2
sphinx-togglebutton 0.3.2
sphinxcontrib-applehelp 1.0.2.dev20220730
sphinxcontrib-devhelp 1.0.2.dev20220730
sphinxcontrib-htmlhelp 2.0.0
sphinxcontrib-jsmath 1.0.1.dev20220730
sphinxcontrib-qthelp 1.0.3.dev20220730
sphinxcontrib-serializinghtml 1.1.5
SQLAlchemy 1.4.41.dev0
stack-data 0.5.1
tabulate 0.8.10
testtools 2.5.0
tomli 2.0.1
tornado 6.2
traitlets 5.4.0
typing_extensions 4.3.0
urllib3 1.26.12
wcwidth 0.2.5
wheel 0.37.1
xmltodict 0.12.0
zipp 3.8.1dfm commented
Thanks! That DeprecationWarning is expected (it's testing backwards compatibility) and has been happening since v3.0