Error in to %in% valid_to() : argument "to" is missing, with no default
TalWac opened this issue · 1 comments
TalWac commented
Dear Developer,
I'm trying to execute the CTSgetR like the example but receiving the above error.
> CTSgetR::CTSgetR(id=c("C15973","C00026","C05381"), from=c("KEGG"), to = c("PubChem CID")) Error in to %in% valid_to() : argument "to" is missing, with no default
my session info:
- Session info -----------------------------------------------------------------------------------------------
setting value
version R version 4.0.4 (2021-02-15)
os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United States.1252
ctype English_United States.1252
tz Asia/Jerusalem
date 2021-03-07
- Packages ---------------------------------------------------------------------------------------------------
! package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.0.0)
BiocManager 1.30.10 2019-11-16 [1] CRAN (R 4.0.3)
bit 4.0.4 2020-08-04 [1] CRAN (R 4.0.4)
bit64 4.0.5 2020-08-30 [1] CRAN (R 4.0.4)
blob 1.2.1 2020-01-20 [1] CRAN (R 4.0.2)
cachem 1.0.4 2021-02-13 [1] CRAN (R 4.0.4)
callr 3.5.1 2020-10-13 [1] CRAN (R 4.0.3)
caret 6.0-86 2020-03-20 [1] CRAN (R 4.0.3)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.0.2)
class 7.3-18 2021-01-24 [2] CRAN (R 4.0.4)
cli 2.3.1 2021-02-23 [1] CRAN (R 4.0.4)
codetools 0.2-18 2020-11-04 [2] CRAN (R 4.0.4)
colorspace 2.0-0 2020-11-11 [1] CRAN (R 4.0.3)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.2)
CTSgetR * 1.3 2021-03-07 [1] Github (dgrapov/CTSgetR@61bd64d)
curl 4.3 2019-12-02 [1] CRAN (R 4.0.2)
data.table 1.13.6 2020-12-30 [1] CRAN (R 4.0.3)
DBI 1.1.1 2021-01-15 [1] CRAN (R 4.0.3)
desc 1.3.0 2021-03-05 [1] CRAN (R 4.0.4)
devtools * 2.3.2 2020-09-18 [1] CRAN (R 4.0.3)
digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.3)
doParallel 1.0.16 2020-10-16 [1] CRAN (R 4.0.3)
dplyr * 1.0.4 2021-02-02 [1] CRAN (R 4.0.3)
ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.2)
fansi 0.4.2 2021-01-15 [1] CRAN (R 4.0.3)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.0.4)
fingerprint 3.5.7 2018-01-07 [1] CRAN (R 4.0.3)
foreach 1.5.1 2020-10-15 [1] CRAN (R 4.0.3)
fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.2)
generics 0.1.0 2020-10-31 [1] CRAN (R 4.0.3)
ggplot2 3.3.3 2020-12-30 [1] CRAN (R 4.0.3)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.3)
gower 0.2.2 2020-06-23 [1] CRAN (R 4.0.3)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.2)
htmltools 0.5.1.1 2021-01-22 [1] CRAN (R 4.0.3)
httpuv 1.5.5 2021-01-13 [1] CRAN (R 4.0.3)
httr * 1.4.2 2020-07-20 [1] CRAN (R 4.0.2)
ipred 0.9-9 2019-04-28 [1] CRAN (R 4.0.3)
iterators 1.0.13 2020-10-15 [1] CRAN (R 4.0.3)
itertools 0.1-3 2014-03-12 [1] CRAN (R 4.0.3)
jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.0.3)
keras 2.3.0.0.9000 2021-02-21 [1] Github (rstudio/keras@419e2ab)
later 1.1.0.1 2020-06-05 [1] CRAN (R 4.0.3)
lattice 0.20-41 2020-04-02 [2] CRAN (R 4.0.4)
lava 1.6.8.1 2020-11-04 [1] CRAN (R 4.0.3)
lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.4)
lubridate 1.7.9.2 2020-11-13 [1] CRAN (R 4.0.3)
magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.3)
MASS 7.3-53 2020-09-09 [2] CRAN (R 4.0.4)
Matrix 1.3-2 2021-01-06 [2] CRAN (R 4.0.4)
memoise 2.0.0 2021-01-26 [1] CRAN (R 4.0.3)
mime 0.10 2021-02-13 [1] CRAN (R 4.0.4)
ModelMetrics 1.2.2.2 2020-03-17 [1] CRAN (R 4.0.3)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.2)
nlme 3.1-152 2021-02-04 [2] CRAN (R 4.0.4)
nnet 7.3-15 2021-01-24 [2] CRAN (R 4.0.4)
pillar 1.5.1 2021-03-05 [1] CRAN (R 4.0.4)
pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 4.0.3)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.2)
pkgload 1.1.0 2020-05-29 [1] CRAN (R 4.0.2)
plyr 1.8.6 2020-03-03 [1] CRAN (R 4.0.2)
png 0.1-7 2013-12-03 [1] CRAN (R 4.0.3)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.2)
pROC 1.17.0.1 2021-01-13 [1] CRAN (R 4.0.3)
processx 3.4.5 2020-11-30 [1] CRAN (R 4.0.3)
prodlim 2019.11.13 2019-11-17 [1] CRAN (R 4.0.3)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.0.3)
ps 1.5.0 2020-12-05 [1] CRAN (R 4.0.3)
purrr * 0.3.4 2020-04-17 [1] CRAN (R 4.0.2)
R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.3)
rcdk 3.5.0 2020-03-11 [1] CRAN (R 4.0.3)
rcdklibs 2.3 2020-03-08 [1] CRAN (R 4.0.3)
Rcpp 1.0.6 2021-01-15 [1] CRAN (R 4.0.3)
readxl 1.3.1 2019-03-13 [1] CRAN (R 4.0.2)
recipes 0.1.15 2020-11-11 [1] CRAN (R 4.0.3)
remotes 2.2.0 2020-07-21 [1] CRAN (R 4.0.3)
reshape2 * 1.4.4 2020-04-09 [1] CRAN (R 4.0.3)
reticulate 1.18-9007 2021-02-21 [1] Github (rstudio/reticulate@e4a9aa2)
Retip 0.5.4 2021-02-11 [1] Github (Paolobnn/Retip@8c23eda)
D rJava 0.9-13 2020-07-06 [1] CRAN (R 4.0.3)
rlang 0.4.10 2020-12-30 [1] CRAN (R 4.0.3)
rpart 4.1-15 2019-04-12 [2] CRAN (R 4.0.4)
rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.0.3)
RSQLite * 2.2.3 2021-01-24 [1] CRAN (R 4.0.4)
rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.0.3)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.2)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.3)
shiny 1.6.0 2021-01-25 [1] CRAN (R 4.0.3)
stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.3)
stringr 1.4.0 2019-02-10 [1] CRAN (R 4.0.2)
survival 3.2-7 2020-09-28 [2] CRAN (R 4.0.4)
tensorflow 2.2.0.9000 2021-02-21 [1] Github (rstudio/tensorflow@8f9ddd9)
testthat 3.0.2 2021-02-14 [1] CRAN (R 4.0.4)
tfruns 1.5.0 2021-02-26 [1] CRAN (R 4.0.4)
tibble 3.0.6 2021-01-29 [1] CRAN (R 4.0.3)
tidyr * 1.1.3 2021-03-03 [1] CRAN (R 4.0.4)
tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.2)
timeDate 3043.102 2018-02-21 [1] CRAN (R 4.0.3)
usethis * 2.0.1 2021-02-10 [1] CRAN (R 4.0.3)
utf8 1.1.4 2018-05-24 [1] CRAN (R 4.0.2)
vctrs 0.3.6 2020-12-17 [1] CRAN (R 4.0.3)
whisker 0.4 2019-08-28 [1] CRAN (R 4.0.2)
withr 2.4.1 2021-01-26 [1] CRAN (R 4.0.3)
xgboost 1.3.2.1 2021-01-18 [1] CRAN (R 4.0.3)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.0.3)
zeallot 0.1.0 2018-01-28 [1] CRAN (R 4.0.3)
[1] D:/BCDD/Documents/R/win-library/4.0
[2] C:/Program Files/R/R-4.0.4/library
D -- DLL MD5 mismatch, broken installation.```
Any hint, idea, or assistance will be helpful,
Regards,
Tal
dgrapov commented
Hi,
Thanks for catching this. I just pushed an update which should fix this issue?