diazlab/CONICS

getGenePositions() in CONICSmat can not deal with gene names in ENSEMBL format

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biobug16 commented

Hi soerenmueller,
I am trying to use 10X data where my filtered matrix has gene names in ENSEMBL format. Going through the CONICSmat pipeline I found getGenePositions() can only accepts the vector of genes in HUGO format. Can you please guide how should I troubleshoot this issue.
Thanks

soerenmueller commented

Hi,

here is some code that allows to convert ensembl to HUGO with the biomart package:

https://bioinformatics.stackexchange.com/questions/2384/ensembl-id-to-genesymbol-with-biomart

Hope this is helpful.