Don't delete trimmed reads, we need them!

Question

Don't delete trimmed reads, we need them!

Closed this issue 8 years ago · 2 comments

johnsolk commented 8 years ago

In 1-quality.rst, don't rm *.fastq.gz after interleaving. We will need these later for transrate and salmon.

Answer 1 · 2016-12-16T23:05:09.000Z

Those are the raw reads and we aren't deleting them - they are linked from ../data/, right?

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On Dec 16, 2016, at 2:56 PM, Lisa Cohen ***@***.***> wrote: In 1-quality.rst, don't rm *.fastq.gz after interleaving. We will need these later for transrate and salmon. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.

Answer 2 · 2016-12-16T23:08:53.000Z

Ah, ok nevermind. Trimmed reads are .qc.fq.gz in /mnt/work/quality