don't use Ubuntu 16.04 for now
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johnsolk commented
There's an installation problem with fastqc:
.zip
files output, but not .html
Throws two different errors:
java.io.FileNotFoundException: /etc/fastqc/Configuration/adapter_list.txt (No such file or directory)
and
java.lang.IllegalArgumentException: No key called gc_sequence:ignore in the config data
Some googling results show others have had this issue. A bit complicated for now. Can revisit later.
https://www.biostars.org/p/211986/
https://www.biostars.org/p/189261/