MuSyC fits are concentration-scale dependent
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djwooten commented
## use the github test dataset "sample_data_1.csv"
## https://github.com/djwooten/synergy/tree/master/datasets
## all concs x 10
model.fit(df['drug1.conc']*10, df['drug2.conc']*10, df['effect'], bootstrap_iterations=100)
print(model.summary(confidence_interval=95))
# result
# beta 0.59 (0.44,0.71) (>0) synergistic
# alpha12 0.37 (0.32,0.49) (<1) antagonistic
# alpha21 2.00 (1.55,2.46) (>1) synergistic
# gamma12 3.29 (1.97,93.37) (>1) synergistic
## all concs x1000
model.fit(df['drug1.conc']*1000, df['drug2.conc']*1000, df['effect'], bootstrap_iterations=100)
print(model.summary(confidence_interval=95))
# result
# beta 0.50 (0.31,0.74) (>0) synergistic
# alpha21 1.89 (1.37,2.75) (>1) synergistic
## only conc2 x1000
model.fit(df['drug1.conc'], df['drug2.conc']*1000, df['effect'], bootstrap_iterations=100)
print(model.summary(confidence_interval=95))
# result
# beta 0.39 (0.24,0.53) (>0) synergistic
# alpha12 0.57 (0.49,0.75) (<1) antagonistic
# alpha21 2.21 (1.76,2.56) (>1) synergistic
# gamma12 3.11 (2.28,5.39) (>1) synergistic
# gamma21 0.87 (0.77,0.97) (<1) antagonistic
djwooten commented
Changed fitting procedure to fit r1 and r2, which are parameters containing dose-scale information.