Geneprof 500 response
erikyao opened this issue · 1 comments
erikyao commented
When running test_geneprof_id_to_transcription_factor_gene_symbols
of tests/QueryGeneProfTestCase
, QueryGeneProf.geneprof_id_to_transcription_factor_gene_symbols
sometimes returns an empty set due to Genprof's 500 response.
Test code:
ret_set = QueryGeneProf.geneprof_id_to_transcription_factor_gene_symbols(16269) # 'HMOX1'
Debugging message:
HTTP response status code: 500 for URL:
http://www.geneprof.org/GeneProf/api/gene.info/regulation/binary/by.target/human/16269.json?with-sample-info=true
Cause of 500 reported by Geneprof:
java.lang.OutOfMemoryError: unable to create new native thread
We may need to add exception-handling code in this case.
dkoslicki commented
This issue was moved to RTXteam/RTX#2