dnieuw

Pinned Repositories

alireduce
Script for reducing GISAID SARS-CoV-2 sequence alignments based on nucleotide distance, sampling date and country
Language:R0 1 00
Ampliclip
Tool to softclip reads in bam files based on amplicon primers
Language:Python00
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Language:C++0 2 00
basicrcourse_brand
Language:R00
BasicRcourseEMC
Language:JavaScript1 1 02
BasicRCourseEMC_slides
Language:JavaScript0 1 01
ENA_SARS_Cov2_nanopore
Pipeline for mapping SARS-CoV2 nanopore reads using nextflow
Language:Python33
IGVshiny
Shiny widget for igv.js
Language:JavaScript4 2 21
platform-comparison-arbovirus
This repository contains the scripts to reproduce the results and figures of the arbovirus platform comparison
Language:Python1 2 00
ViromeBrowser
ViromeBrowser Shiny App
Language:R2 1 00

dnieuw's Repositories

dnieuw/IGVshiny
Shiny widget for igv.js
Language:JavaScript4 2 21
dnieuw/ENA_SARS_Cov2_nanopore
Pipeline for mapping SARS-CoV2 nanopore reads using nextflow
Language:Python33
dnieuw/ViromeBrowser
ViromeBrowser Shiny App
Language:R2 1 00
dnieuw/BasicRcourseEMC
Language:JavaScript1 1 02
dnieuw/platform-comparison-arbovirus
This repository contains the scripts to reproduce the results and figures of the arbovirus platform comparison
Language:Python1 2 00
dnieuw/alireduce
Script for reducing GISAID SARS-CoV-2 sequence alignments based on nucleotide distance, sampling date and country
Language:R0 1 00
dnieuw/Ampliclip
Tool to softclip reads in bam files based on amplicon primers
Language:Python00
dnieuw/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Language:C++0 2 00
dnieuw/basicrcourse_brand
Language:R00
dnieuw/BasicRCourseEMC_slides
Language:JavaScript0 1 01
dnieuw/BASTA
Basic Sequence Taxonomy Annotator
Language:Python01
dnieuw/covid-sequence-analysis-workflow
Language:Nextflow0 1 00
dnieuw/cyjShiny
An R/shiny widget for cytoscape.js
Language:JavaScript0 1 00
dnieuw/biopython
Official git repository for Biopython (originally converted from CVS)
dnieuw/dashboards
Jupyter Dynamic Dashboards from Notebooks
Language:Jupyter Notebook2 0
dnieuw/diamond
Accelerated BLAST compatible local sequence aligner.
Language:C
dnieuw/igv.js
Lightweight html5 version of the Integrative Genomics Viewer
Language:JavaScript
dnieuw/mpox-south-kivu-mapping-manuscript
Language:Python
dnieuw/N-A-W
Nanopore Analysis Workflow a workflow for demultiplexing and mapping nanopore amplicon data
Language:Python3 11
dnieuw/Porechop
adapter trimmer for Oxford Nanopore reads
Language:C++
dnieuw/primer-check
Language:R
dnieuw/QTLshiny
A lightweight interactive interface for the qtl package in R
Language:R
dnieuw/rhandsontable
A htmlwidgets implementation of Handsontable.js
Language:HTML1 0
dnieuw/rocker
R configurations for Docker
Language:Shell2 0
dnieuw/rocker-versioned
Run earlier versions of R using docker
Language:Shell2 0
dnieuw/shiny
Easy interactive web applications with R
Language:R
dnieuw/shiny-docker
Language:Shell
dnieuw/Virconsens
Language:Python
dnieuw/vsearch
Versatile open-source tool for metagenomics
Language:C++
dnieuw/zika-tutorial
Data and scripts for Zika virus tutorial