dpacheco0921

auditory_setup_calibration

BridgingRegistrations

Bridging registrations to convert between different Drosophila template brains

ca_source_extraction_int

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

CMTK_matlab_wrapper

Matlab functions to interphase with CMTK toolbox

ColorMIP_Mask_Search

ColorMIP_Mask_Search plugin for Fiji

computer_cluster_interface

Scripts to interface with computer clusters

DrosAdultBRAINdomains

Drosophila Adult Brain Domains

DrosAdultHalfBRAINdomains

Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.

DrosAdultVNSdomains

Drosophila Adult Ventral Nervous System Domains

FlyCaImAn

Calcium Imaging Processing Pipeline of 3D time series

dpacheco0921/FlyCaImAn

Calcium Imaging Processing Pipeline of 3D time series

dpacheco0921/auditory_setup_calibration

dpacheco0921/BridgingRegistrations

Bridging registrations to convert between different Drosophila template brains

dpacheco0921/ca_source_extraction_int

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

dpacheco0921/CMTK_matlab_wrapper

Matlab functions to interphase with CMTK toolbox

dpacheco0921/ColorMIP_Mask_Search

ColorMIP_Mask_Search plugin for Fiji

dpacheco0921/computer_cluster_interface

Scripts to interface with computer clusters

dpacheco0921/DrosAdultBRAINdomains

Drosophila Adult Brain Domains

dpacheco0921/DrosAdultHalfBRAINdomains

Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.

dpacheco0921/DrosAdultVNSdomains

Drosophila Adult Ventral Nervous System Domains

dpacheco0921/DrosophilidBridgingRegistrations

Bridging registrations to convert between different Drosophila species template brains

dpacheco0921/facemap

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

dpacheco0921/FilterResolution

Code for filter resolution paper figure.

dpacheco0921/Master8_obj_MatLab

Matlab Object to interface with Master8

dpacheco0921/MeshVol_CPD_Registration

Personal mirror of Andriy Myronenko's Coherent Point Drift library, which my plant registration method uses.

dpacheco0921/MirrorRegistrations

Mirroring points in various Drosophila melanogaster template brain spaces

dpacheco0921/MovieSlider

Embeddable Matlab panel for playback, scrolling, and contrast/color map adjustment of 3D movies.

dpacheco0921/neuronbridger

R client utilities for interacting with the neuronbridge matching service

dpacheco0921/neuroSummerSchools

List of summer schools in neuroscience and related fields

dpacheco0921/NoRMCorre

Matlab routines for online non-rigid motion correction of calcium imaging data

dpacheco0921/pulseTypeClassifier

pulses in, Pfast & Pslow out

dpacheco0921/ridgeModel

dpacheco0921/rlvm

MATLAB implementation of a rectified latent variable model for analysis of neural time series data.

dpacheco0921/shadedErrorBar

Produce elegant shaded error bars in MATLAB

dpacheco0921/songSegmenter

dpacheco0921/StackViewer

A MATLAB wrapper of FIJI macros to display many channels per single stack or overlay many single channel stacks

dpacheco0921/treestoolbox

TREES toolbox