draeger-lab/ModelPolisher
ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
JavaMIT
Issues
- 10
Correct the use of units and unit definitions
#8 opened by draeger - 7
Map all annotations to BiGG
#20 opened by draeger - 7
- 12
- 2
- 4
incorrect id - geneProduct correspondence
#28 opened by silviamorins - 18
SBO term for confidence score
#5 opened by draeger - 3
Error in building : setupDB FAILED
#36 opened by codekaust - 6
Update or deprecate matlab parser
#37 opened by matthiaskoenig - 0
lightJar, bareJar fetches bigg.zip
#40 opened by codekaust - 1
Security checks
#4 opened by draeger - 2
Implement unit tests
#6 opened by draeger - 4
- 0
- 2
Improve documentation on built instructions
#31 opened by draeger - 0
Containerisation of ModelPolisher using Docker.
#38 opened by codekaust - 1
Restructure ModelPolisher.
#49 opened by codekaust - 0
Check if species is BiGG Metabolite, reaction is BiGG Reaction before getting ADB annotations
#54 opened by codekaust - 0
- 5
gradle build fails
#52 opened by matthiaskoenig - 3
- 0
Extend ModelPolisher's annotation capabilities for geneProducts not having BiGGIds.
#41 opened by codekaust - 0
Extend ModelPolisher's annotation capabilities for species and reactions not having BiGGIds but links to other databases' identifiers.
#39 opened by codekaust - 1
Gene names for genes
#25 opened by zakandrewking - 1
Subsystem information missing
#26 opened by draeger - 0
Extract display messages to properties files.
#10 opened by draeger - 0
- 4
- 0
- 0
Allow conversion from mat files to SBML without the requirement to pull information from BiGG
#1 opened by draeger - 0
Create contract class for database access
#3 opened by draeger - 1
Check for incomplete fluxObjectivs
#7 opened by draeger - 0
Set group kind attribute
#9 opened by draeger