duartemolha

duartemolha's Stars

• twitter/the-algorithm

  Source code for Twitter's Recommendation Algorithm

  Language:Scala62.1k34298912.2k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k50517332

• peregrine-lang/Peregrine

  A blazing fast language for the blazing fast world(WIP)

  Language:C++1.5k705877

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C92858831287

• rocky/remake

  Enhanced GNU Make - tracing, error reporting, debugging, profiling and more

  Language:C786497373

• bw2/ConfigArgParse

  A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.

  Language:Python72318200121

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C662482k240

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java636481.2k381

• CyanogenMod/android_vendor_cyanogen

  CyanogenMod Android vendor tree

  Language:Shell576280229

• arq5x/gemini

  a lightweight db framework for exploring genetic variation.

  Language:Python31844568120

• luntergroup/octopus

  Bayesian haplotype-based mutation calling

  Language:C++3021926938

• GregoryFaust/samblaster

  samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

  Language:C++221195030

• apache/incubator-retired-wave

  Apache Wave is now retired

  Language:Java21437094

• DecodeGenetics/graphtyper

  Population-scale genotyping using pangenome graphs

  Language:C++1671011720

• Ensembl/VEP_plugins

  Plugins for the Ensembl Variant Effect Predictor (VEP)

  Language:Perl13822204115

• lh3/dipcall

  Reference-based variant calling pipeline for a pair of phased haplotype assemblies

  Language:JavaScript944149

• opencb/cellbase

  High-Performance NoSQL database and RESTful web services to access to most relevant biological data

  Language:Java892942153

• JonathanCoe/bitseal

  Bitmessage client for Android

  Language:Java5724911

• DecodeGenetics/svimmer

  Structural variant merging tool

  Language:Python448109

• uci-cbcl/PyLOH

  Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity

  Language:Python3814915

• arq5x/nanopore-scripts

  Various scripts and recipes for working with nanopore data

  Language:Python349315

• DecodeGenetics/popSTR

  PopSTR - A Population based microsatellite genotyper

  Language:C++31779

• nickloman/nanopore

  Software for nanopore data analysis

  Language:Python301605

• tkchafin/mrbait

  Pipeline for universal design of target-enrichment probes from various sources of genomic data.

  Language:Python243224

• cmayer/BaitFisher-package

  The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:

  Language:C++11597

• DecodeGenetics/BamQC

  Quality control for BAM files

  Language:C++4700

• slzhao/ExonDel

  ExonDel is a tool designed specially to efficiently detect exon deletions.

  Language:Perl45123