Pinned Repositories
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
bad-sequence-remover
Removes spurious sequences from the input alignment.
exonerate
A generic tool for sequence alignment
Gblockc.pl
to get around the bug with Gblocks -t=c
genblastG_extension
genblastg_patch
patched version of genblastg v.139 of the Jack Chen lab
genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
pal4nal.pl
similar as what pal2nal.pl do, i.e. change protein alignment into CDS alignment, except some difference.
sterlet_Msch
codes/scripts for sterlet project
tutorials
Tutorials on phylogenetic and phylogenomic inference
dukecomeback's Repositories
dukecomeback/pal4nal.pl
similar as what pal2nal.pl do, i.e. change protein alignment into CDS alignment, except some difference.
dukecomeback/bad-sequence-remover
Removes spurious sequences from the input alignment.
dukecomeback/sterlet_Msch
codes/scripts for sterlet project
dukecomeback/tutorials
Tutorials on phylogenetic and phylogenomic inference
dukecomeback/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
dukecomeback/exonerate
A generic tool for sequence alignment
dukecomeback/Gblockc.pl
to get around the bug with Gblocks -t=c
dukecomeback/genblastG_extension
dukecomeback/genblastg_patch
patched version of genblastg v.139 of the Jack Chen lab
dukecomeback/genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
dukecomeback/lungfish
codes used in lungfish program
dukecomeback/maf2diff.pl
Calculate sequence difference from a maf alignment file
dukecomeback/phast
PHAST
dukecomeback/Some_Perl_Snippets
dukecomeback/splign
dukecomeback/swordtail
dukecomeback/UniqueKMER
Generate unique KMERs for every contig in a FASTA file
dukecomeback/XiphoMicroEvo
codes for Xiphophorus micro-evolution