easyrider's Stars
goldbergyoni/nodebestpractices
:white_check_mark: The Node.js best practices list (July 2024)
iamadamdev/bypass-paywalls-chrome
Bypass Paywalls web browser extension for Chrome and Firefox.
algorithm-visualizer/algorithm-visualizer
:fireworks:Interactive Online Platform that Visualizes Algorithms from Code
facebook/flow
Adds static typing to JavaScript to improve developer productivity and code quality.
pmndrs/jotai
👻 Primitive and flexible state management for React
koreader/koreader
An ebook reader application supporting PDF, DjVu, EPUB, FB2 and many more formats, running on Cervantes, Kindle, Kobo, PocketBook and Android devices
owasp-amass/amass
In-depth attack surface mapping and asset discovery
owncast/owncast
Take control over your live stream video by running it yourself. Streaming + chat out of the box.
finos/perspective
A data visualization and analytics component, especially well-suited for large and/or streaming datasets.
tc39/proposal-pipeline-operator
A proposal for adding a useful pipe operator to JavaScript.
niespodd/browser-fingerprinting
Analysis of Bot Protection systems with available countermeasures 🚿. How to defeat anti-bot system 👻 and get around browser fingerprinting scripts 🕵️♂️ when scraping the web?
NAalytics/Assemblies-of-putative-SARS-CoV2-spike-encoding-mRNA-sequences-for-vaccines-BNT-162b2-and-mRNA-1273
RNA vaccines have become a key tool in moving forward through the challenges raised both in the current pandemic and in numerous other public health and medical challenges. With the rollout of vaccines for COVID-19, these synthetic mRNAs have become broadly distributed RNA species in numerous human populations. Despite their ubiquity, sequences are not always available for such RNAs. Standard methods facilitate such sequencing. In this note, we provide experimental sequence information for the RNA components of the initial Moderna (https://pubmed.ncbi.nlm.nih.gov/32756549/) and Pfizer/BioNTech (https://pubmed.ncbi.nlm.nih.gov/33301246/) COVID-19 vaccines, allowing a working assembly of the former and a confirmation of previously reported sequence information for the latter RNA. Sharing of sequence information for broadly used therapeutics has the benefit of allowing any researchers or clinicians using sequencing approaches to rapidly identify such sequences as therapeutic-derived rather than host or infectious in origin. For this work, RNAs were obtained as discards from the small portions of vaccine doses that remained in vials after immunization; such portions would have been required to be otherwise discarded and were analyzed under FDA authorization for research use. To obtain the small amounts of RNA needed for characterization, vaccine remnants were phenol-chloroform extracted using TRIzol Reagent (Invitrogen), with intactness assessed by Agilent 2100 Bioanalyzer before and after extraction. Although our analysis mainly focused on RNAs obtained as soon as possible following discard, we also analyzed samples which had been refrigerated (~4 ℃) for up to 42 days with and without the addition of EDTA. Interestingly a substantial fraction of the RNA remained intact in these preparations. We note that the formulation of the vaccines includes numerous key chemical components which are quite possibly unstable under these conditions-- so these data certainly do not suggest that the vaccine as a biological agent is stable. But it is of interest that chemical stability of RNA itself is not sufficient to preclude eventual development of vaccines with a much less involved cold-chain storage and transportation. For further analysis, the initial RNAs were fragmented by heating to 94℃, primed with a random hexamer-tailed adaptor, amplified through a template-switch protocol (Takara SMARTerer Stranded RNA-seq kit), and sequenced using a MiSeq instrument (Illumina) with paired end 78-per end sequencing. As a reference material in specific assays, we included RNA of known concentration and sequence (from bacteriophage MS2). From these data, we obtained partial information on strandedness and a set of segments that could be used for assembly. This was particularly useful for the Moderna vaccine, for which the original vaccine RNA sequence was not available at the time our study was carried out. Contigs encoding full-length spikes were assembled from the Moderna and Pfizer datasets. The Pfizer/BioNTech data [Figure 1] verified the reported sequence for that vaccine (https://berthub.eu/articles/posts/reverse-engineering-source-code-of-the-biontech-pfizer-vaccine/), while the Moderna sequence [Figure 2] could not be checked against a published reference. RNA preparations lacking dsRNA are desirable in generating vaccine formulations as these will minimize an otherwise dramatic biological (and nonspecific) response that vertebrates have to double stranded character in RNA (https://www.nature.com/articles/nrd.2017.243). In the sequence data that we analyzed, we found that the vast majority of reads were from the expected sense strand. In addition, the minority of antisense reads appeared different from sense reads in lacking the characteristic extensions expected from the template switching protocol. Examining only the reads with an evident template switch (as an indicator for strand-of-origin), we observed that both vaccines overwhelmingly yielded sense reads (>99.99%). Independent sequencing assays and other experimental measurements are ongoing and will be needed to determine whether this template-switched sense read fraction in the SmarterSeq protocol indeed represents the actual dsRNA content in the original material. This work provides an initial assessment of two RNAs that are now a part of the human ecosystem and that are likely to appear in numerous other high throughput RNA-seq studies in which a fraction of the individuals may have previously been vaccinated. ProtoAcknowledgements: Thanks to our colleagues for help and suggestions (Nimit Jain, Emily Greenwald, Lamia Wahba, William Wang, Amisha Kumar, Sameer Sundrani, David Lipman, Bijoyita Roy). Figure 1: Spike-encoding contig assembled from BioNTech/Pfizer BNT-162b2 vaccine. Although the full coding region is included, the nature of the methodology used for sequencing and assembly is such that the assembled contig could lack some sequence from the ends of the RNA. Within the assembled sequence, this hypothetical sequence shows a perfect match to the corresponding sequence from documents available online derived from manufacturer communications with the World Health Organization [as reported by https://berthub.eu/articles/posts/reverse-engineering-source-code-of-the-biontech-pfizer-vaccine/]. The 5’ end for the assembly matches the start site noted in these documents, while the read-based assembly lacks an interrupted polyA tail (A30(GCATATGACT)A70) that is expected to be present in the mRNA.
steveseguin/vdo.ninja
VDO.Ninja is a powerful tool that lets you bring remote video feeds into OBS or other studio software via WebRTC.
Azure/Microsoft-Defender-for-Cloud
Welcome to the Microsoft Defender for Cloud community repository
nickboucher/trojan-source
Trojan Source: Invisible Vulnerabilities
bridgecrewio/terragoat
TerraGoat is Bridgecrew's "Vulnerable by Design" Terraform repository. TerraGoat is a learning and training project that demonstrates how common configuration errors can find their way into production cloud environments.
sandersn/mini-typescript
A miniature model of the Typescript compiler, intended to teach the structure of the real Typescript compiler
doyoubi/undermoon
Mordern Redis Cluster solution for easy operation.
mandiant/sunburst_countermeasures
jstrieb/systems-programming-cheat-sheet
Cheat sheet for x86-64 Unix systems programming
schuhumi/alpine_kindle
Utilities to get Alpine Linux running on Kindles
sindresorhus/into-stream
Convert a string/promise/array/iterable/asynciterable/buffer/typedarray/arraybuffer/object into a stream
cado-security/DFIR_Resources_REvil_Kaseya
Resources for DFIR Professionals Responding to the REvil Ransomware Kaseya Supply Chain Attack
Ganapati/Crawlic
Web recon tool (find temporary files, parse robots.txt, search some folders, google dorks and search domains hosted on same server)
cheslijones/wsl2-minikube
This project should help you get WSL2, Docker, Kubernetes, Minikube, and Skaffold up and running.
sfinktah/lodash-cpp
A ersatz lodash/underscore header-only library for C++14
sandersn/dt-perf
Scripts for analysing Definitely Typed performance on recent versions of Typescript
sandersn/fp-ts
Functional programming in TypeScript
sandersn/sift.js
Use Mongodb queries to filter data in JavaScript ✨
sandersn/typescript-notes
High-level notes about TypeScript