Pinned Repositories
3Dcoloc3regions
Evaluates signal variation in three mitochondrial regions: center, inner boundary, outer boundary
4SpecID
4SpecID.github.io
4SpecID official website
autocomplete
Fig adds autocomplete to your terminal.
CellPoseSegPlusIntensityMeasurement
CellProfiler_Introduction
A first introduction into CellProfiler.
dnaDatabaseValidation
Scripts developed to identify and correct inaccuracies, such as erroneous/incomplete metadata or poor DNA sequences quality in public genetic databases, providing the users with a tool able to aid the decisions on the species identification of unknown (or disputed) samples in a simple, visual and semi-automated way.
DRIVE_SS
econdesousa.github.io
extendedPlotProfile
Creates a plot profile by considering spheres around ROI points
econdesousa's Repositories
econdesousa/PGEE
:exclamation: This is a read-only mirror of the CRAN R package repository. PGEE — Penalized Generalized Estimating Equations in High-Dimension forked from "https://github.com/ad1729/PGEE/tree/master"
econdesousa/Incomp2Mut
econdesousa/econdesousa.github.io
econdesousa/free-programming-books
:books: Freely available programming books
econdesousa/ImageAnalysis
Here I leave some scripts that I have been working on to solve small problems of users of my institute.
econdesousa/DRIVE_SS
econdesousa/portfolio
econdesousa/3Dcoloc3regions
Evaluates signal variation in three mitochondrial regions: center, inner boundary, outer boundary
econdesousa/CellPoseSegPlusIntensityMeasurement
econdesousa/autocomplete
Fig adds autocomplete to your terminal.
econdesousa/extendedPlotProfile
Creates a plot profile by considering spheres around ROI points
econdesousa/ONNXclassifier
econdesousa/machine_learning_complete
A comprehensive repository containing 30+ notebooks on learning machine learning!
econdesousa/ImageJMacro_Introduction
A first intoduction to scripting in Fiji using the ImageJ Macro language.
econdesousa/4SpecID
econdesousa/snake
Copied from https://gist.github.com/alisterburt/b25c99743494803d64f3924d400404da
econdesousa/dnaDatabaseValidation
Scripts developed to identify and correct inaccuracies, such as erroneous/incomplete metadata or poor DNA sequences quality in public genetic databases, providing the users with a tool able to aid the decisions on the species identification of unknown (or disputed) samples in a simple, visual and semi-automated way.
econdesousa/lma-2021-bioimage-analysis-python
"Bioimage analysis in Python" workshop at LMA2021
econdesousa/interpretAI_DigiPath
Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
econdesousa/hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
econdesousa/4SpecID.github.io
4SpecID official website
econdesousa/Forest_plot_with_table
econdesousa/CellProfiler_Introduction
A first introduction into CellProfiler.
econdesousa/napari-training-course
Lectures for a napari training course
econdesousa/stanford-cs-229-machine-learning
VIP cheatsheets for Stanford's CS 229 Machine Learning
econdesousa/Fst_FixationIndex_Stats
Fixation index (Fst) measures the allelic frequency variation among populations. Here we intent to combine different methods to quantify the genetic differences between two or more populations by combining different formulations of the fixation index.
econdesousa/N3DFix
N3dFix is an open-source software which uses a correction algorithm to automatically find and fix swelling artifacts in neuronal reconstructions. https://doi.org/10.1007/s12021-016-9308-7
econdesousa/SeqLearn
Here we present the source code of Conde-Sousa, E. & Aguiar, P. J Comput Neurosci (2013) 35: 187. https://doi.org/10.1007/s10827-013-0447-7
econdesousa/FDR_FSIGEN_2019
Source code for Supp Data App from: "Optimizing the information increase through the addition of relatives and genetic markers in identification and kinship cases" FSI: Genetics, 2019, doi: https://doi.org/10.1016/j.fsigen.2019.02.019