Pinned Repositories
ABM_CTI
Code, scripts and output for agent based models of contact tracing by Marcus Low and Nathan Geffen
faststi
Fast microsimulation (or agent-based model) of sexually transmitted infections
incidence-calculator
Incidence calculator that reports Incidence/Prevalence covariance
incidence-combined-method
Analytical code for estimating incidence using a combination of demographic and biomarker-based approaches
incidence-estimation.org
The new website for incidence-estimation.org. Temporary URL:
incidence-synthetic-cohort
Performs basic HIV incidence Estimation according to the method of Mahiane et al (A general HIV incidence inference scheme based on likelihood of individual level data and a population renewal equation. PLoS One 2012; 7(9):e44377)
residualrisk
Weusten et al. model for residual risk of transfusion transmission
faststi
Fast microsimulation (or agent-based model) of sexually transmitted infections
inctools
Incidence Estimation Tools
ccp_model
COVID-19 Convalescent Plasma Model
eduardgrebe's Repositories
eduardgrebe/ABM_CTI
Code, scripts and output for agent based models of contact tracing by Marcus Low and Nathan Geffen
eduardgrebe/faststi
Fast microsimulation (or agent-based model) of sexually transmitted infections
eduardgrebe/incidence-calculator
Incidence calculator that reports Incidence/Prevalence covariance
eduardgrebe/incidence-combined-method
Analytical code for estimating incidence using a combination of demographic and biomarker-based approaches
eduardgrebe/incidence-estimation.org
The new website for incidence-estimation.org. Temporary URL:
eduardgrebe/incidence-synthetic-cohort
Performs basic HIV incidence Estimation according to the method of Mahiane et al (A general HIV incidence inference scheme based on likelihood of individual level data and a population renewal equation. PLoS One 2012; 7(9):e44377)
eduardgrebe/residualrisk
Weusten et al. model for residual risk of transfusion transmission
eduardgrebe/inctools
Incidence Estimation Tools
eduardgrebe/infection-dating-tool
Django app for the Infection Dating Tool
eduardgrebe/mdri-benchmarking
Simulation code used for benchmarking MDRI estimation methods
eduardgrebe/openscience
Repository for Open Science workshop at Research Days 2017
eduardgrebe/preprint-latex-template
A generic template for LaTeX articles
eduardgrebe/r-inctools-feedstock
A conda-smithy repository for r-inctools.
eduardgrebe/sfacente.github.io
This is the repository for the website of CEPHIA, the Consortium for the Evaluation and Performance of HIV Incidence Assays.
eduardgrebe/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks