edwardlavender
Postdoc at SIAM/Eawag. PhD from St Andrews and MASTS. Interested in ecology and modelling in R.
Eawag
Pinned Repositories
flapper
R Package: Routines for the analysis of passive acoustic telemetry data (Lavender et al., 2023).
fvcom.tbx
R Package: An R Toolbox for the Unstructured Grid Finite Volume Community Ocean Model (FVCOM)
patter
Particle filters, smoothers and sampling algorithms for animal movement modelling, with a focus on passive acoustic telemetry systems.
patter-demo
R code supporting Lavender et al. (in prep). patter: particle algorithms for animal tracking in R and Julia.
Patter.jl
Particle filters, smoothers and sampling algorithms for animal movement modelling, with a focus on passive acoustic telemetry systems.
prettyGraphics
R Package: Pretty Graphics with R
rzss-flapper
Statistical modelling for Cole et al. (in prep). Physiological responses to capture, handling and tagging in flapper skate (Dipturus intermedius).
temp_abund_proj
Methods for Lavender, Fox and Burrows (2021). Modelling the impacts of climate change on the relative abundance of shallow-water marine fish at a global scale. PLOS ONE 16(10): e0258184. https://doi.org/10.1371/journal.pone.0258184
Tools4ETS
R Package: Tools for Ecological Time Series
westcoms_validation
R code supporting Lavender et al. (2022). Benthic animal-borne sensors and citizen science combine to validate ocean modelling. Scientific Reports, 12, 16613. https://doi.org/10.1038/s41598-022-20254-z
edwardlavender's Repositories
edwardlavender/fvcom.tbx
R Package: An R Toolbox for the Unstructured Grid Finite Volume Community Ocean Model (FVCOM)
edwardlavender/flapper
R Package: Routines for the analysis of passive acoustic telemetry data (Lavender et al., 2023).
edwardlavender/patter
Particle filters, smoothers and sampling algorithms for animal movement modelling, with a focus on passive acoustic telemetry systems.
edwardlavender/prettyGraphics
R Package: Pretty Graphics with R
edwardlavender/patter-demo
R code supporting Lavender et al. (in prep). patter: particle algorithms for animal tracking in R and Julia.
edwardlavender/Patter.jl
Particle filters, smoothers and sampling algorithms for animal movement modelling, with a focus on passive acoustic telemetry systems.
edwardlavender/rzss-flapper
Statistical modelling for Cole et al. (in prep). Physiological responses to capture, handling and tagging in flapper skate (Dipturus intermedius).
edwardlavender/temp_abund_proj
Methods for Lavender, Fox and Burrows (2021). Modelling the impacts of climate change on the relative abundance of shallow-water marine fish at a global scale. PLOS ONE 16(10): e0258184. https://doi.org/10.1371/journal.pone.0258184
edwardlavender/Tools4ETS
R Package: Tools for Ecological Time Series
edwardlavender/westcoms_validation
R code supporting Lavender et al. (2022). Benthic animal-borne sensors and citizen science combine to validate ocean modelling. Scientific Reports, 12, 16613. https://doi.org/10.1038/s41598-022-20254-z
edwardlavender/dv
Code development tools for R
edwardlavender/eawag-hunziker
Methods supporting Lavender et al. (2023). Sex- and length-dependent variation in migration propensity in brown trout. Ecology of Freshwater Fish.
edwardlavender/edwardlavender
Config files for my GitHub profile.
edwardlavender/flapper_appl
Illustrative, real-world applications of the 'flapper' algorithm family, supporting Lavender et al. (2023). An integrative modelling framework for passive acoustic telemetry. Methods in Ecology and Evolution, 00, 1–13.
edwardlavender/flapper_sim
Simulation-based illustration and evaluation of the 'flapper' algorithm family, supporting Lavender et al. (2023). An integrative modelling framework for passive acoustic telemetry. Methods in Ecology and Evolution, 00, 1–13.
edwardlavender/igfs_2021
Irish Groundfish Survey 2021 Analysis
edwardlavender/OceanAdapt
Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions
edwardlavender/red_rocks_westcoms
R code supporting Dodd et al. (2022). First report of an egg nursery for the Critically Endangered flapper skate Dipturus intermedius (Rajiformes: Rajidae). Aquatic Conservation: Marine and Freshwater Ecosystems, 32( 10), 1647– 1659. https://doi.org/10.1002/aqc.3857
edwardlavender/rstats_blog
Adventures of an ecologist in statistical modelling
edwardlavender/utils.add
R Package: Additional Utilities in R