eead-csic-compbio/get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
PerlNOASSERTION
Issues
- 3
Restart get_holomogue from blastp results
#116 opened by vincebaby6 - 1
ANI coding sequences + noncoding?
#115 opened by TommyH-Tran - 2
Question about ANI terminology
#114 opened by TommyH-Tran - 6
Error: find_COGs
#105 opened by Pirxtrurl - 2
- 2
Could not solve for environment specs
#112 opened by iamaizhan - 1
Error in Get_homologues analysis
#110 opened by Utk92 - 1
Error in input genbank files
#111 opened by DAguileraN - 2
Removing input files: do I need re-run all the analysis? Or there's another way?
#109 opened by hadassaloth - 14
- 10
Question: Is there a way to identify which genomes correspond to core-genome sample numbers?
#107 opened by TommyH-Tran - 2
COGreadblast produce empty results
#106 opened by RiversDong - 1
Pangenome question
#104 opened by TommyH-Tran - 3
File Output?
#103 opened by TommyH-Tran - 6
Error with FNA and FAA sequence order
#102 opened by brettChapman - 5
- 4
Invalid protein cluster files generated by get_homologues-est when .faa and .fna have genes in different order.
#100 opened by guignonv - 1
Phylogenetic tree not showing strain name
#95 opened by apoorva004 - 3
Generating ANI svg is broken
#98 opened by TommyH-Tran - 3
core genes list annotations
#97 opened by apoorva004 - 1
Phylogeny Question
#96 opened by TommyH-Tran - 3
ANI svg
#92 opened by TommyH-Tran - 2
maybe a bug in annotate_cluster.pl
#94 opened by carolynzy - 6
- 1
Reporting lineage specific genes?
#91 opened by anandksrao - 1
- 5
Docker has get_homologues-est?
#68 opened by Silverfoxcome - 4
- 11
Errror running pfam_enrich.pl
#70 opened by brettChapman - 2
- 2
Number of threads use during clustering
#72 opened by P-Leao - 2
- 10
files in tmp are not re-used
#74 opened by anacristinareis - 5
Coverage and identity in BLAST alignment
#75 opened by ireneortega - 6
Is there a way to make the pdf outputs from get_homologues into svg files? So, they are easily editable through inkscape or adobe illustrator?
#76 opened by TommyH-Tran - 2
Why does the pangenome size differ so much?
#77 opened by TommyH-Tran - 3
Trouble creating ANI heatplot
#78 opened by TommyH-Tran - 2
- 26
- 4
Core genome size abruptly dropping
#81 opened by fermza - 4
question "_cluster_makeHomolog.pl" command
#82 opened by carolynzy - 8
Duplicate clusters
#83 opened by carolynzy - 5
What is different between complete fungal genome using get_homologues and get_homologues-est?
#66 opened by sunnycqcn - 1
CDS lost in consensus pangenome matrix
#84 opened by ireneortega - 1
error in plot_matrix_heatmap.sh
#85 opened by byeollee - 7
pangenome_matrix_genes_t0.tab is empty
#86 opened by ireneortega - 1
ERROR when plotting pangenome matrix heatmap
#88 opened by FenggChengg - 5
- 6
Number of redundant clusters doesn't match
#90 opened by carolynzy - 8