elbamos/largeVis

Error in newest R package version

Closed this issue · 12 comments

rwarnung commented

Hi,
I get an error, when I load the package:

> library(largeVis)

Loading required package: Matrix
Error : object ‘opticsXi’ is not exported by 'namespace:dbscan'
Error: package or namespace load failed for ‘largeVis’

my sessionInfo() is below.
When I google I find this - so somebody else has had this error too. They point to the CRAN page where this error apears too:
https://cran.r-project.org/web/checks/check_results_largeVis.html

Is there an issue with the newest version? Thank you!

R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] Matrix_1.2-6

loaded via a namespace (and not attached):
[1] tools_3.3.1 Rcpp_0.12.7 grid_3.3.1 dbscan_1.0-0 lattice_0.20-33

elbamos commented
  • 👍2
elbamos commented

@rwarnung @pablo14 try the version in my develop branch.

rwarnung commented

@elbamos works fine for me under windows. Thank you!

pablo14 commented

Thanks @elbamos for the following up. It's not working in mac.
Now the install.packages("largeVis") works, but when I do the library(largeVis) it throws the same error:

> library(largeVis)
Loading required package: Matrix
Error : object ‘opticsXi’ is not exported by 'namespace:dbscan'
Error: package or namespace load failed for ‘largeVis’

Here my session:

> sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS Sierra 10.12.1
elbamos commented
pablo14 commented

That error appears when I try to install from CRAN:
install.packages("largeVis")
After your last comment, I tried to instal by:

install_github("elbamos/largeVis")

But it failed with other error.

How can I install from the dev branch you mentioned?

elbamos commented

install_github("elbamos/largeVis", ref = "develop")

pablo14 commented

Thanks!
Now it works, but I had one more problem:

ld: warning: directory not found for option '-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [largeVis.so] Error 1
ERROR: compilation failed for package ‘largeVis’

This solves this problem: http://thecoatlessprofessor.com/programming/rcpp-rcpparmadillo-and-os-x-mavericks-lgfortran-and-lquadmath-error/

After this, I successfully tested some examples from the vignette.

elbamos commented
pablo14 commented

I wrote a post that I'm close to publish and i mention this package, I'd like to avoid the readers regarding the error message when they do install.packages("largeVis"). Do you suggest I offer them to install the package by: install_github("elbamos/largeVis", ref = "develop") instead?

elbamos commented