Underlying Learning Objectives
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elizabethmcd commented
- Queuing jobs on Condor or for loops?
- Will have to teach a bit of Condor and submission jobs
- Docker installations, general installations
- memory requirements, multi-threading, storage considerations
- public resources
elizabethmcd commented
Tasks:
- Setting up and assessing a metagenomic assembly
- Understanding the concept of differential coverage/composition-based binning
- Queuing mapping and binning jobs based on single assemblies and coassemblies
- QC'ing bins and dereplicating to nonredundant sets
- Classifying draft bins in many ways (automatic, manual)
- Downloading references to compare to
- Functional annotation
- Downstream analysis (metatranscriptomics, population comparisons, metabolic reconstructions)