[Bug]: WARNING due to undefined param.threads

[ammaraziz]

What happened?

When running the pipeline I get this warning:

WARN: Access to undefined parameter `threads` -- Initialise it to a default value eg. `params.threads = some_value`

I believe this is due to the following code:

wf-artic/lib/fastqingress.nf

Line 190 in 428300f

label params.process_label

Which uses params.threads which is not specified in the config:

wf-artic/nextflow.config

Lines 12 to 18 in 428300f

	params {
	help = false
	version = false
	out_dir = "output"
	artic_threads = 4
	pangolin_threads = 4
	analyse_unclassified = false

Operating System

ubuntu 20.04

Workflow Execution

Command line

Workflow Execution - EPI2ME Labs Versions

No response

Workflow Execution - CLI Execution Profile

Docker

Workflow Version

v0.3.28

Relevant log output

WARN: Access to undefined parameter `threads` -- Initialise it to a default value eg. `params.threads = some_value`

[mattdmem]

Hi @ammaraziz,

Thanks for this... we'll implement a fix.

Thanks

Matt