Transcripts with class_code "u" in gene expression matrix
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kataksk commented
Ask away!
Thank you very much for creating a great workflow!
I am doing my analysis using non-model organisms with incomplete gene models. gffcompare seems to classify many transcripts as class_code "u". Looking at the final results (e.g. gene_processed_feature_bc_matrix and transcript_processed_feature_bc_matrix), transcripts classified as class_code "u" etc seem to be ignored in the gene expression matrix. Is this interpretation correct?